U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Bltp3a bridge-like lipid transfer protein family member 3A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 309637, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Bltp3aprovided by RGD
    Official Full Name
    bridge-like lipid transfer protein family member 3Aprovided by RGD
    Primary source
    RGD:1307264
    See related
    EnsemblRapid:ENSRNOG00000000495 AllianceGenome:RGD:1307264
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Uhrf1bp1
    Summary
    Predicted to enable histone deacetylase binding activity and identical protein binding activity. Predicted to be located in late endosome. Orthologous to human BLTP3A (bridge-like lipid transfer protein family member 3A). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Adrenal (RPKM 100.4), Kidney (RPKM 81.6) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Bltp3a in Genome Data Viewer
    Location:
    20p12
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (5912033..5956404)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (5910261..5954641)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (7431235..7475515)

    Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene inflammation and lipid regulator with UBA-like and NBR1-like domains Neighboring gene uncharacterized LOC134483861 Neighboring gene small nucleolar RNA SNORA26 Neighboring gene small nuclear ribonucleoprotein polypeptide C Neighboring gene TATA-box binding protein associated factor 11 Neighboring gene ankyrin repeat and sterile alpha motif domain containing 1A

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. ICBP90, an E2F-1 target, recruits HDAC1 and binds to methyl-CpG through its SRA domain. Unoki M, et al. Oncogene, 2004 Oct 7. PMID 15361834
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables histone deacetylase binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables histone deacetylase binding ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    located_in late endosome ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    bridge-like lipid transfer protein family member 3A
    Names
    UHRF1 binding protein 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001431780.1 → NP_001418709.1  bridge-like lipid transfer protein family member 3A

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000020
      UniProtKB/TrEMBL
      A0A8I6A3T8

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086038.1 Reference GRCr8

      Range
      5912033..5956404
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002728921.6 → XP_002728967.3  bridge-like lipid transfer protein family member 3A isoform X2

      Related
      ENSRNOP00000081841.2, ENSRNOT00000102198.2
      Conserved Domains (1) summary
      pfam12624
      Location:5 → 89
      Chorein_N; N-terminal region of Chorein or VPS13

    2. XM_039099275.1 → XP_038955203.1  bridge-like lipid transfer protein family member 3A isoform X1

      UniProtKB/TrEMBL
      A6JJN8

    3. XM_039099274.2 → XP_038955202.1  bridge-like lipid transfer protein family member 3A isoform X1

      UniProtKB/TrEMBL
      A6JJN8

    4. XM_039099276.2 → XP_038955204.1  bridge-like lipid transfer protein family member 3A isoform X3

      UniProtKB/TrEMBL
      A6JJN8

    RNA

    1. XR_005497711.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.