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    Mslnl mesothelin-like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 363554, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Mslnlprovided by RGD
    Official Full Name
    mesothelin-likeprovided by RGD
    Primary source
    RGD:1561732
    See related
    EnsemblRapid:ENSRNOG00000039339 AllianceGenome:RGD:1561732
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1561732
    Summary
    Predicted to be involved in cell-matrix adhesion. Predicted to be located in membrane. Predicted to be active in cell surface. Orthologous to human MSLNL (mesothelin like). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 5.1), Brain (RPKM 3.8) and 9 other tissues See more
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    Genomic context

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    See Mslnl in Genome Data Viewer
    Location:
    10q12
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (15260084..15276190)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (14755344..14771673)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (15103047..15119427)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene G protein subunit gamma 13 Neighboring gene chromosome transmission fidelity factor 18 Neighboring gene RNA pseudouridine synthase domain containing 1 Neighboring gene mesothelin Neighboring gene cytosolic iron-sulfur assembly component 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in cell-matrix adhesion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cell surface IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    mesothelin-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      15260084..15276190
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063270020.1 → XP_063126090.1  mesothelin-like protein isoform X1

    2. XM_008767615.4 → XP_008765837.1  mesothelin-like protein isoform X2

      See identical proteins and their annotated locations for XP_008765837.1

      UniProtKB/TrEMBL
      D4AB62
      Related
      ENSRNOP00000057036.3, ENSRNOT00000060286.5
      Conserved Domains (1) summary
      pfam06060
      Location:1 → 584
      Mesothelin; Pre-pro-megakaryocyte potentiating factor precursor (Mesothelin)

    3. XM_039087109.2 → XP_038943037.1  mesothelin-like protein isoform X3

      Conserved Domains (1) summary
      pfam06060
      Location:1 → 379
      Mesothelin; Pre-pro-megakaryocyte potentiating factor precursor (Mesothelin)
    Nucleotide Protein Strain
    Heading Accession and Version

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