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    Mrps28 mitochondrial ribosomal protein S28 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 689025, updated on 9-Dec-2024

    Summary

    Official Symbol
    Mrps28provided by RGD
    Official Full Name
    mitochondrial ribosomal protein S28provided by RGD
    Primary source
    RGD:1597461
    See related
    AllianceGenome:RGD:1597461
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Mrps28l; LRRGT00031
    Summary
    Predicted to be involved in mitochondrial translation. Predicted to be located in mitochondrion. Predicted to be part of mitochondrial small ribosomal subunit. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 47. Orthologous to human MRPS28 (mitochondrial ribosomal protein S28). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Muscle (RPKM 139.0), Heart (RPKM 113.9) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Mrps28 in Genome Data Viewer
    Location:
    2q23
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (94728034..94858641)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (92820676..92951302)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (95077577..95080825)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene high mobility group protein B1-like Neighboring gene tumor protein D52 Neighboring gene cytochrome c, somatic-like Neighboring gene uncharacterized protein C14orf119 homolog Neighboring gene small nucleolar RNA SNORA38 Neighboring gene tropomyosin 2, pseudogene 1 Neighboring gene small nucleolar RNA SNORA17

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane  
    part_of mitochondrial small ribosomal subunit  
    located_in mitochondrion  

    General protein information

    Preferred Names
    small ribosomal subunit protein bS1m
    Names
    28S ribosomal protein S28, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001412947.1NP_001399876.1  small ribosomal subunit protein bS1m

      Status: VALIDATED

      Source sequence(s)
      FM057072, JAXUCZ010000002
      UniProtKB/TrEMBL
      A6IH67

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      94728034..94858641
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

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