U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Fam118a family with sequence similarity 118, member A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 300120, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Fam118aprovided by RGD
    Official Full Name
    family with sequence similarity 118, member Aprovided by RGD
    Primary source
    RGD:1560783
    See related
    EnsemblRapid:ENSRNOG00000013764 AllianceGenome:RGD:1560783
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1560783
    Summary
    Predicted to enable identical protein binding activity. Orthologous to human FAM118A (family with sequence similarity 118 member A). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 92.1), Brain (RPKM 29.8) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Fam118a in Genome Data Viewer
    Location:
    7q34
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (118032313..118058888)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (116152448..116178976)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (125937928..125964455)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134479760 Neighboring gene uroplakin 3A Neighboring gene structural maintenance of chromosomes 1B Neighboring gene U6 spliceosomal RNA Neighboring gene RIB43A domain with coiled-coils 2

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article
    2. A proteome-scale map of the human interactome network. Rolland T, et al. Cell, 2014 Nov 20. PMID 25416956, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Clone Names

    • MGC189391

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    protein FAM118A

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001173336.1 → NP_001166807.1  protein FAM118A

      See identical proteins and their annotated locations for NP_001166807.1

      Status: PROVISIONAL

      Source sequence(s)
      BC169018
      UniProtKB/TrEMBL
      B5DFD4
      Related
      ENSRNOP00000107006.1, ENSRNOT00000129572.1
      Conserved Domains (1) summary
      pfam13289
      Location:142 → 247
      SIR2_2; SIR2-like domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      118032313..118058888
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039078847.2 → XP_038934775.1  protein FAM118A isoform X3

      UniProtKB/TrEMBL
      F7FDN4
      Conserved Domains (1) summary
      pfam13289
      Location:149 → 254
      SIR2_2; SIR2-like domain

    2. XM_063263325.1 → XP_063119395.1  protein FAM118A isoform X2

    3. XM_063263328.1 → XP_063119398.1  protein FAM118A isoform X4

      UniProtKB/TrEMBL
      A0A0G2K3T5

    4. XM_063263324.1 → XP_063119394.1  protein FAM118A isoform X1

    5. XM_006242157.5 → XP_006242219.1  protein FAM118A isoform X3

      See identical proteins and their annotated locations for XP_006242219.1

      UniProtKB/TrEMBL
      F7FDN4
      Related
      ENSRNOP00000045006.4, ENSRNOT00000044274.6
      Conserved Domains (1) summary
      pfam13289
      Location:149 → 254
      SIR2_2; SIR2-like domain

    6. XM_063263323.1 → XP_063119393.1  protein FAM118A isoform X1

    7. XM_063263326.1 → XP_063119396.1  protein FAM118A isoform X2

    8. XM_063263327.1 → XP_063119397.1  protein FAM118A isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools