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    Bend4 BEN domain containing 4 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 681008, updated on 9-Dec-2024

    Summary

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    Symbol
    Bend4provided by RGD
    Full Name
    BEN domain containing 4provided by RGD
    Primary source
    RGD:1584735
    See related
    EnsemblRapid:ENSRNOG00000053303 AllianceGenome:RGD:1584735
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable DNA binding activity. Orthologous to human BEND4 (BEN domain containing 4). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 43.6), Brain (RPKM 26.5) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Bend4 in Genome Data Viewer
    Location:
    14p11
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (41106206..41142572)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (40753048..40788686)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (42399359..42401643) , (42401665..42437957)

    Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102547499 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene Neighboring gene uncharacterized LOC108352745 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene solute carrier family 30 member 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    BEN domain containing 4; BEN domain-containing protein 4
    Names
    BEN domain-containing protein 4-like
    serine/arginine repetitive matrix protein 3-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086032.1 Reference GRCr8

      Range
      41106206..41142572
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063273822.1 → XP_063129892.1  BEN domain-containing protein 4 isoform X3

    2. XM_006250982.5 → XP_006251044.4  BEN domain-containing protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A0G2K5Z6
      Related
      ENSRNOP00000073618.2, ENSRNOT00000090148.3
      Conserved Domains (2) summary
      smart00338
      Location:335 → 372
      BRLZ; basic region leucin zipper
      pfam10523
      Location:423 → 497
      BEN; BEN domain

    3. XM_039092733.2 → XP_038948661.1  BEN domain-containing protein 4 isoform X2

      Conserved Domains (1) summary
      smart00338
      Location:335 → 372
      BRLZ; basic region leucin zipper
    Nucleotide Protein Strain
    Heading Accession and Version

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