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    Bud13 BUD13 homolog [ Rattus norvegicus (Norway rat) ]

    Gene ID: 300687, updated on 27-Dec-2024

    Summary

    Official Symbol
    Bud13provided by RGD
    Official Full Name
    BUD13 homologprovided by RGD
    Primary source
    RGD:1308076
    See related
    EnsemblRapid:ENSRNOG00000018665 AllianceGenome:RGD:1308076
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1308076
    Summary
    Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be located in nucleoplasm. Predicted to be part of U2-type precatalytic spliceosome. Orthologous to human BUD13 (BUD13 homolog). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 71.4), Lung (RPKM 56.0) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Bud13 in Genome Data Viewer
    Location:
    8q22-q23
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (55471818..55487652)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (46575124..46590964)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (50573026..50588860)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134480162 Neighboring gene apolipoprotein A5 Neighboring gene RIKEN cDNA 4931429L15 gene like Neighboring gene ZPR1 zinc finger Neighboring gene uncharacterized LOC134480043 Neighboring gene small nucleolar RNA SNORA17

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Clone Names

    • MGC116139

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in mRNA splicing, via spliceosome  
    involved_in mRNA splicing, via spliceosome  
    involved_in mRNA splicing, via spliceosome  
    involved_in mRNA splicing, via spliceosome  
    Component Evidence Code Pubs
    part_of U2-type precatalytic spliceosome  
    part_of U2-type precatalytic spliceosome  
    part_of U2-type precatalytic spliceosome  
    part_of U2-type spliceosomal complex  
    located_in nucleoplasm  
    located_in nucleoplasm  
    located_in nucleus  
    located_in nucleus  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001025277.1NP_001020448.1  BUD13 homolog

      See identical proteins and their annotated locations for NP_001020448.1

      Status: PROVISIONAL

      Source sequence(s)
      BC097995
      UniProtKB/Swiss-Prot
      Q4QQU1
      UniProtKB/TrEMBL
      A6J477, G3V8F3
      Related
      ENSRNOP00000025232.3, ENSRNOT00000025232.6
      Conserved Domains (1) summary
      pfam09736
      Location:477618
      Bud13; Pre-mRNA-splicing factor of RES complex

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      55471818..55487652
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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