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    Stbd1 starch binding domain 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 305234, updated on 27-Dec-2024

    Summary

    Official Symbol
    Stbd1provided by RGD
    Official Full Name
    starch binding domain 1provided by RGD
    Primary source
    RGD:1311800
    See related
    EnsemblRapid:ENSRNOG00000002218 AllianceGenome:RGD:1311800
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1311800
    Summary
    Predicted to enable cargo receptor activity; enzyme binding activity; and glycogen binding activity. Predicted to be involved in glycophagy; intracellular transport; and substrate localization to autophagosome. Predicted to be located in T-tubule; endoplasmic reticulum; and perinuclear region of cytoplasm. Predicted to be active in membrane. Orthologous to human STBD1 (starch binding domain 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Muscle (RPKM 437.5), Liver (RPKM 261.5) and 6 other tissues See more
    Orthologs
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    Genomic context

    See Stbd1 in Genome Data Viewer
    Location:
    14p22
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (15754769..15758174, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (15470452..15473857, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (16976355..16979760, complement)

    Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134481722 Neighboring gene coiled-coil domain containing 158 Neighboring gene uncharacterized LOC120096575 Neighboring gene family with sequence similarity 47, member E Neighboring gene Y box binding protein 1, pseudogene 3 Neighboring gene scavenger receptor class B, member 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    General gene information

    Clone Names

    • MGC108973

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables cargo receptor activity  
    enables enzyme binding  
    enables glycogen binding  
    enables glycogen binding  
    enables glycogen binding  
    enables polysaccharide binding  
    enables starch binding  
    Process Evidence Code Pubs
    involved_in glycogen catabolic process  
    involved_in glycogen catabolic process  
    involved_in glycophagy  
    involved_in glycophagy  
    involved_in intracellular transport  
    involved_in substrate localization to autophagosome  
    Component Evidence Code Pubs
    located_in T-tubule  
    located_in endoplasmic reticulum  
    located_in endoplasmic reticulum membrane  
    is_active_in membrane  
    located_in membrane  
    located_in membrane  
    located_in perinuclear region of cytoplasm  
    located_in perinuclear region of cytoplasm  
    located_in phagophore assembly site membrane  
    located_in plasma membrane  

    General protein information

    Preferred Names
    starch-binding domain-containing protein 1
    Names
    genethonin-1
    glycophagy cargo receptor stbd1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013988.1NP_001014010.1  starch-binding domain-containing protein 1

      See identical proteins and their annotated locations for NP_001014010.1

      Status: PROVISIONAL

      Source sequence(s)
      BC089867
      UniProtKB/Swiss-Prot
      Q5FVN1
      UniProtKB/TrEMBL
      A6KK65
      Related
      ENSRNOP00000078314.1, ENSRNOT00000119917.2
      Conserved Domains (1) summary
      cd05813
      Location:239333
      CBM20_genethonin_1; Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch ...

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086032.1 Reference GRCr8

      Range
      15754769..15758174 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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