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    Zfp329 zinc finger protein 329 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 308361, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Zfp329provided by RGD
    Official Full Name
    zinc finger protein 329provided by RGD
    Primary source
    RGD:1565029
    See related
    EnsemblRapid:ENSRNOG00000019376 AllianceGenome:RGD:1565029
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1565029
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZNF329 (zinc finger protein 329). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 56.7), Adrenal (RPKM 52.9) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Zfp329 in Genome Data Viewer
    Location:
    1q21
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (82469019..82570542, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (73403067..73498349, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (65781547..65800492)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene vomeronasal 2 receptor, 36 Neighboring gene microRNA 295-2 Neighboring gene zinc finger and SCAN domain containing 18 Neighboring gene zinc finger protein 110 Neighboring gene zinc finger protein 8 Neighboring gene zinc finger and SCAN domain containing 22

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 329

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107477.2 → NP_001100947.1  zinc finger protein 329

      See identical proteins and their annotated locations for NP_001100947.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A6KQN2, D4AA65
      Related
      ENSRNOP00000106254.1, ENSRNOT00000154363.1
      Conserved Domains (3) summary
      COG5048
      Location:188 → 540
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:235 → 255
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:247 → 271
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      82469019..82570542 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039111111.2 → XP_038967039.1  zinc finger protein 329 isoform X1

      Related
      ENSRNOP00000110039.1, ENSRNOT00000155263.1
      Conserved Domains (3) summary
      COG5048
      Location:221 → 476
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:240 → 260
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:477 → 501
      zf-H2C2_2; Zinc-finger double domain

    2. XM_006228109.5 → XP_006228171.1  zinc finger protein 329 isoform X2

      See identical proteins and their annotated locations for XP_006228171.1

      UniProtKB/TrEMBL
      A6KQN2, D4AA65
      Related
      ENSRNOP00000109760.1, ENSRNOT00000157145.1
      Conserved Domains (3) summary
      COG5048
      Location:188 → 540
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:235 → 255
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:247 → 271
      zf-H2C2_2; Zinc-finger double domain

    3. XM_006228110.5 → XP_006228172.1  zinc finger protein 329 isoform X2

      See identical proteins and their annotated locations for XP_006228172.1

      UniProtKB/TrEMBL
      A6KQN2, D4AA65
      Related
      ENSRNOP00000110254.1, ENSRNOT00000124916.1
      Conserved Domains (3) summary
      COG5048
      Location:188 → 540
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:235 → 255
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:247 → 271
      zf-H2C2_2; Zinc-finger double domain

    RNA

    1. XR_010051709.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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