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    Ccdc169 coiled-coil domain containing 169 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 499618, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Ccdc169provided by RGD
    Official Full Name
    coiled-coil domain containing 169provided by RGD
    Primary source
    RGD:1593170
    See related
    EnsemblRapid:ENSRNOG00000038095 AllianceGenome:RGD:1593170
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human CCDC169 (coiled-coil domain containing 169). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 36.1) and Brain (RPKM 1.1) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ccdc169 in Genome Data Viewer
    Location:
    2q26
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (141471762..141501325)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (139321644..139351161)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (144551382..144581044)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134485736 Neighboring gene uncharacterized LOC134485916 Neighboring gene spartin Neighboring gene U6 spliceosomal RNA Neighboring gene spermatogenesis and oogenesis specific basic helix-loop-helix 2 Neighboring gene uncharacterized LOC134485918 Neighboring gene doublecortin-like kinase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 169

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109184.1 → NP_001102654.1  coiled-coil domain-containing protein 169

      See identical proteins and their annotated locations for NP_001102654.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474003
      UniProtKB/TrEMBL
      A0A0G2K3N0, A6JVE7, D4ABE7
      Related
      ENSRNOP00000019018.5, ENSRNOT00000019018.8
      Conserved Domains (1) summary
      pfam15372
      Location:55 → 181
      DUF4600; Domain of unknown function (DUF4600)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      141471762..141501325
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006232368.5 → XP_006232430.1  coiled-coil domain-containing protein 169 isoform X1

      UniProtKB/TrEMBL
      A0A0G2K3N0, A0A8I6AE52
      Related
      ENSRNOP00000090646.1, ENSRNOT00000103039.2
      Conserved Domains (1) summary
      pfam15372
      Location:55 → 181
      DUF4600; Domain of unknown function (DUF4600)

    2. XM_008761003.4 → XP_008759225.1  coiled-coil domain-containing protein 169 isoform X2

      UniProtKB/TrEMBL
      A0A0G2K3N0
      Related
      ENSRNOP00000072706.3, ENSRNOT00000082923.3
      Conserved Domains (1) summary
      pfam15372
      Location:55 → 181
      DUF4600; Domain of unknown function (DUF4600)

    3. XM_039102882.2 → XP_038958810.1  coiled-coil domain-containing protein 169 isoform X4

      Conserved Domains (1) summary
      pfam15372
      Location:55 → 156
      DUF4600; Domain of unknown function (DUF4600)

    4. XM_063282366.1 → XP_063138436.1  coiled-coil domain-containing protein 169 isoform X3

    5. XM_039102884.2 → XP_038958812.1  coiled-coil domain-containing protein 169 isoform X5

      Conserved Domains (1) summary
      pfam15372
      Location:55 → 138
      DUF4600; Domain of unknown function (DUF4600)

    6. XM_039102883.2 → XP_038958811.1  coiled-coil domain-containing protein 169 isoform X4

      Conserved Domains (1) summary
      pfam15372
      Location:55 → 156
      DUF4600; Domain of unknown function (DUF4600)

    7. XM_063282367.1 → XP_063138437.1  coiled-coil domain-containing protein 169 isoform X5

    8. XM_039102886.2 → XP_038958814.1  coiled-coil domain-containing protein 169 isoform X7

      Conserved Domains (1) summary
      pfam15372
      Location:1 → 79
      DUF4600; Domain of unknown function (DUF4600)

    9. XM_039102885.2 → XP_038958813.1  coiled-coil domain-containing protein 169 isoform X6

      UniProtKB/TrEMBL
      A6JVE8
      Conserved Domains (1) summary
      pfam15372
      Location:1 → 99
      DUF4600; Domain of unknown function (DUF4600)

    RNA

    1. XR_010063641.1 RNA Sequence

    2. XR_005500341.2 RNA Sequence

    3. XR_010063642.1 RNA Sequence

    4. XR_005500340.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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    Chemical Information
    Molecular Biology Databases
    Research Materials