U.S. flag

An official website of the United States government

Links from GEO Profiles

    • Showing Current items.

    Nid2-ps16 nidogen 2, pseudogene 15 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 302022, updated on 17-Aug-2024

    Summary

    Official Symbol
    Nid2-ps16provided by RGD
    Official Full Name
    nidogen 2, pseudogene 15provided by RGD
    Primary source
    RGD:1593261
    See related
    AllianceGenome:RGD:1593261
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Uterus (RPKM 65.2), Brain (RPKM 60.4) and 9 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Nid2-ps16 in Genome Data Viewer
    Location:
    3p13
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (24770986..24781770)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (4086903..4097689)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (39104..56035, complement)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 431-like Neighboring gene ubiquitin A-52 residue ribosomal protein fusion product 1, pseudogene 3 Neighboring gene Rho GTPase activating protein 20, pseudogene 3 Neighboring gene thioredoxin-like 4A, pseudogene 3 Neighboring gene N(alpha)-acetyltransferase 11, NatA catalytic subunit, pseudogene 7

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_172213.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      24770986..24781770
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    External link. Please review our privacy policy.