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    Cmip c-Maf-inducing protein [ Rattus norvegicus (Norway rat) ]

    Gene ID: 292051, updated on 9-Dec-2024

    Summary

    Official Symbol
    Cmipprovided by RGD
    Official Full Name
    c-Maf-inducing proteinprovided by RGD
    Primary source
    RGD:1306101
    See related
    EnsemblRapid:ENSRNOG00000013178 AllianceGenome:RGD:1306101
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    c-Mip; RGD1306101
    Summary
    Predicted to act upstream of or within in utero embryonic development. Predicted to be active in cytosol and nucleoplasm. Orthologous to human CMIP (c-Maf inducing protein). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Spleen (RPKM 69.5), Kidney (RPKM 61.2) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Cmip in Genome Data Viewer
    Location:
    19q12
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (62213402..62419443)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (45304597..45510653)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (49792273..50000535)

    Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene gigaxonin Neighboring gene transfer RNA serine (anticodon AGA) 23 Neighboring gene LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated like 1 Neighboring gene ATP synthase subunit f, mitochondrial-like Neighboring gene uncharacterized LOC102548350 Neighboring gene uncharacterized LOC120098622 Neighboring gene phospholipase C, gamma 2 Neighboring gene uncharacterized LOC120098492 Neighboring gene short chain dehydrogenase/reductase family 42E, member 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Interactions

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in cytosol  
    located_in cytosol  
    is_active_in nucleoplasm  
    located_in nucleoplasm  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001163273.1NP_001156745.1  C-Maf-inducing protein

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000019
      UniProtKB/TrEMBL
      A0A0G2JYB9, A0A8I6A9M1
      Related
      ENSRNOP00000070595.2, ENSRNOT00000083991.3
      Conserved Domains (3) summary
      cd09293
      Location:594768
      AMN1; Antagonist of mitotic exit network protein 1
      sd00034
      Location:664687
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam00169
      Location:71157
      PH; PH domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086037.1 Reference GRCr8

      Range
      62213402..62419443
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063277945.1XP_063134015.1  C-Maf-inducing protein isoform X1

      UniProtKB/TrEMBL
      A6IZH3, F1M8D3
    2. XM_006255684.5XP_006255746.1  C-Maf-inducing protein isoform X2

      See identical proteins and their annotated locations for XP_006255746.1

      UniProtKB/TrEMBL
      F1M8D3
      Conserved Domains (2) summary
      cd09293
      Location:476615
      AMN1; Antagonist of mitotic exit network protein 1
      sd00034
      Location:511534
      LRR_AMN1; leucine-rich repeat [structural motif]
    3. XM_039097643.2XP_038953571.1  C-Maf-inducing protein isoform X3

      UniProtKB/TrEMBL
      F1M8D3
      Conserved Domains (2) summary
      cd09293
      Location:442581
      AMN1; Antagonist of mitotic exit network protein 1
      sd00034
      Location:477500
      LRR_AMN1; leucine-rich repeat [structural motif]
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