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    Tmem47 transmembrane protein 47 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 501569, updated on 9-Dec-2024

    Summary

    Official Symbol
    Tmem47provided by RGD
    Official Full Name
    transmembrane protein 47provided by RGD
    Primary source
    RGD:1564799
    See related
    EnsemblRapid:ENSRNOG00000030418 AllianceGenome:RGD:1564799
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1564799
    Summary
    Predicted to be involved in cell-cell adhesion. Predicted to be located in plasma membrane. Predicted to be active in cell-cell junction. Orthologous to human TMEM47 (transmembrane protein 47). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 244.2), Brain (RPKM 151.4) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Tmem47 in Genome Data Viewer
    Location:
    Xq21
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (49338532..49365026)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (45421405..45447900)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (48779110..48805644)

    Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC302729 Neighboring gene nuclear autoantigenic sperm protein, pseudogene 1 Neighboring gene uncharacterized LOC134484038 Neighboring gene serine and arginine rich splicing factor 19

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in cell-cell adhesion  
    Component Evidence Code Pubs
    located_in adherens junction  
    is_active_in cell-cell junction  
    located_in cell-cell junction  
    located_in plasma membrane  
    located_in plasma membrane  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109317.1NP_001102787.1  transmembrane protein 47

      See identical proteins and their annotated locations for NP_001102787.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473966
      UniProtKB/TrEMBL
      A6IPU9, D3ZBB3
      Related
      ENSRNOP00000055235.2, ENSRNOT00000058434.4
      Conserved Domains (1) summary
      cl21598
      Location:21170
      PMP22_Claudin; PMP-22/EMP/MP20/Claudin family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086039.1 Reference GRCr8

      Range
      49338532..49365026
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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