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    Lemd1 LEM domain containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 102556277, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Lemd1provided by RGD
    Official Full Name
    LEM domain containing 1provided by RGD
    Primary source
    RGD:2322707
    See related
    EnsemblRapid:ENSRNOG00000051244 AllianceGenome:RGD:2322707
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human LEMD1 (LEM domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 48.0) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Lemd1 in Genome Data Viewer
    Location:
    13q13
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (46183860..46250105)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (43631705..43697765)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (48969789..49035519)

    Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene ETS transcription factor ELK4 Neighboring gene major facilitator superfamily domain containing 4A Neighboring gene uncharacterized LOC134481495 Neighboring gene cyclin-dependent kinase 18 Neighboring gene BLACAT1 overlapping LEMD1 locus Neighboring gene microRNA 135b Neighboring gene uncharacterized LOC120096185 Neighboring gene kelch domain containing 8A Neighboring gene NUAK family kinase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    LEM domain-containing protein 1
    Names
    LEM domain-containing protein 1-like
    rCG46494-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402597.1 → NP_001389526.1  LEM domain-containing protein 1

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000013
      UniProtKB/TrEMBL
      A0A0G2K8I8, A6IC44
      Related
      ENSRNOP00000074624.3, ENSRNOT00000080556.3

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086031.1 Reference GRCr8

      Range
      46183860..46250105
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063271949.1 → XP_063128019.1  LEM domain-containing protein 1 isoform X3

    2. XM_017598971.3 → XP_017454460.1  LEM domain-containing protein 1 isoform X5

    3. XM_063271948.1 → XP_063128018.1  LEM domain-containing protein 1 isoform X2

    4. XM_039091175.2 → XP_038947103.1  LEM domain-containing protein 1 isoform X6

      UniProtKB/TrEMBL
      A0A096MJM6, A6IC45
      Conserved Domains (1) summary
      pfam03020
      Location:3 → 42
      LEM; LEM domain

    5. XM_063271950.1 → XP_063128020.1  LEM domain-containing protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A0U1RRW4
      Related
      ENSRNOP00000075835.2, ENSRNOT00000092560.3

    6. XM_063271947.1 → XP_063128017.1  LEM domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A0G2K8I8, A6IC44

    7. XM_039091171.2 → XP_038947099.1  LEM domain-containing protein 1 isoform X5

    8. XM_017598972.3 → XP_017454461.1  LEM domain-containing protein 1 isoform X5

    9. XM_017598969.3 → XP_017454458.1  LEM domain-containing protein 1 isoform X2

    10. XM_039091174.2 → XP_038947102.1  LEM domain-containing protein 1 isoform X5

    11. XM_039091173.2 → XP_038947101.1  LEM domain-containing protein 1 isoform X5

    Nucleotide Protein Strain
    Heading Accession and Version

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