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    Arl9 ARF like GTPase 9 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 289565, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Arl9provided by RGD
    Official Full Name
    ARF like GTPase 9provided by RGD
    Primary source
    RGD:1303337
    See related
    EnsemblRapid:ENSRNOG00000029628 AllianceGenome:RGD:1303337
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable GTP binding activity and GTPase activity. Orthologous to human ARL9 (ADP ribosylation factor like GTPase 9). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 77.4) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Arl9 in Genome Data Viewer
    Location:
    14p11
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (31511845..31521038, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (31157573..31166803, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (33436803..33447516, complement)

    Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120096733 Neighboring gene HOP homeobox Neighboring gene sperm microtubule associated protein 2 like Neighboring gene uncharacterized LOC134481837 Neighboring gene uncharacterized LOC120096735 Neighboring gene signal recognition particle 72 Neighboring gene uncharacterized LOC120096737 Neighboring gene phosphoribosylaminoimidazole carboxylase and phosphoribosylaminoimidazolesuccinocarboxamide synthase Neighboring gene phosphoribosyl pyrophosphate amidotransferase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. RASL11A, member of a novel small monomeric GTPase gene family, is down-regulated in prostate tumors. Louro R, et al. Biochem Biophys Res Commun, 2004 Apr 9. PMID 15033445

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ADP-ribosylation factor-like protein 9
    Names
    ADP-ribosylation factor like GTPase 9
    ADP-ribosylation factor-like 9

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_212459.2 → NP_997624.2  ADP-ribosylation factor-like protein 9

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000014
      UniProtKB/TrEMBL
      A0A8I6A3R6

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086032.1 Reference GRCr8

      Range
      31511845..31521038 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017599099.3 → XP_017454588.1  ADP-ribosylation factor-like protein 9 isoform X1

      Related
      ENSRNOP00000085370.2, ENSRNOT00000108975.2

    2. XM_039091682.2 → XP_038947610.1  ADP-ribosylation factor-like protein 9 isoform X3

      Conserved Domains (2) summary
      PTZ00121
      Location:106 → 519
      PTZ00121; MAEBL; Provisional
      cl38936
      Location:613 → 721
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    3. XM_039091681.2 → XP_038947609.1  ADP-ribosylation factor-like protein 9 isoform X2

      Conserved Domains (2) summary
      PTZ00121
      Location:106 → 519
      PTZ00121; MAEBL; Provisional
      cl38936
      Location:613 → 721
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    RNA

    1. XR_010057349.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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