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    Zfp362 zinc finger protein 362 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 297879, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Zfp362provided by RGD
    Official Full Name
    zinc finger protein 362provided by RGD
    Primary source
    RGD:1306498
    See related
    EnsemblRapid:ENSRNOG00000043364 AllianceGenome:RGD:1306498
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1306498
    Summary
    Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Orthologous to human ZNF362 (zinc finger protein 362). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 45.4), Adrenal (RPKM 34.1) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Zfp362 in Genome Data Viewer
    Location:
    5q36
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (146403469..146437707, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (141119073..141153304, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (146951195..146985450, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene polyhomeotic homolog 2 Neighboring gene alpha 1,3-galactosyltransferase 2 Neighboring gene uncharacterized LOC102551009 Neighboring gene uncharacterized LOC120102984

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 362

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191612.1 → NP_001178541.1  zinc finger protein 362

      See identical proteins and their annotated locations for NP_001178541.1

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      A0A8I5ZWA1, A6ISG0, D4A633
      Related
      ENSRNOP00000007761.5, ENSRNOT00000007761.9
      Conserved Domains (5) summary
      COG5189
      Location:305 → 357
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      PRK14971
      Location:27 → 131
      PRK14971; DNA polymerase III subunit gamma/tau
      sd00017
      Location:255 → 275
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:253 → 275
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:267 → 292
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      146403469..146437707 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006238922.4 → XP_006238984.1  zinc finger protein 362 isoform X1

      See identical proteins and their annotated locations for XP_006238984.1

      UniProtKB/TrEMBL
      A0A8I5ZWA1, A6ISG0, D4A633
      Conserved Domains (5) summary
      COG5189
      Location:305 → 357
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      PRK14971
      Location:27 → 131
      PRK14971; DNA polymerase III subunit gamma/tau
      sd00017
      Location:255 → 275
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:253 → 275
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:267 → 292
      zf-H2C2_2; Zinc-finger double domain

    2. XM_039109415.2 → XP_038965343.1  zinc finger protein 362 isoform X2

      UniProtKB/TrEMBL
      D4A633
      Conserved Domains (5) summary
      COG5189
      Location:292 → 344
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      PRK14971
      Location:14 → 118
      PRK14971; DNA polymerase III subunit gamma/tau
      sd00017
      Location:242 → 262
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:240 → 262
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:254 → 279
      zf-H2C2_2; Zinc-finger double domain

    3. XM_063287287.1 → XP_063143357.1  zinc finger protein 362 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZWA1, A6ISG0, D4A633

    4. XM_006238923.5 → XP_006238985.1  zinc finger protein 362 isoform X1

      See identical proteins and their annotated locations for XP_006238985.1

      UniProtKB/TrEMBL
      A0A8I5ZWA1, A6ISG0, D4A633
      Related
      ENSRNOP00000082019.1, ENSRNOT00000098832.2
      Conserved Domains (5) summary
      COG5189
      Location:305 → 357
      SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
      PRK14971
      Location:27 → 131
      PRK14971; DNA polymerase III subunit gamma/tau
      sd00017
      Location:255 → 275
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:253 → 275
      zf-C2H2; Zinc finger, C2H2 type
      pfam13465
      Location:267 → 292
      zf-H2C2_2; Zinc-finger double domain

    RNA

    1. XR_005504378.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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