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    Ms4a20 membrane-spanning 4-domains, subfamily A, member 20 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 102557108, updated on 27-Nov-2024

    Summary

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    Official Symbol
    Ms4a20provided by RGD
    Official Full Name
    membrane-spanning 4-domains, subfamily A, member 20provided by RGD
    Primary source
    RGD:7639871
    See related
    EnsemblRapid:ENSRNOG00000067110 AllianceGenome:RGD:7639871
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Restricted expression toward (RPKM 254.3) See more
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    Genomic context

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    See Ms4a20 in Genome Data Viewer
    Location:
    1q43
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (217176490..217223881, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (207751598..207798970, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (227157087..227321873, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene sorting nexin 5, pseudogene 1 Neighboring gene membrane spanning 4-domains A8 Neighboring gene membrane-spanning 4-domains, subfamily A, member 19 Neighboring gene membrane spanning 4-domains A13

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC102557108; uncharacterized protein Ms4a20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001432886.1 → NP_001419815.1  uncharacterized protein LOC102557108 isoform a

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A0A8I6A9Z0, A6I081

    2. NM_001432887.1 → NP_001419816.1  uncharacterized protein LOC102557108 isoform a

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A0A8I6A9Z0, A6I081

    3. NM_001432888.1 → NP_001419817.1  uncharacterized protein LOC102557108 isoform b

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001

    4. NM_001432889.1 → NP_001419818.1  uncharacterized protein LOC102557108 isoform b

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001

    5. NM_001432890.1 → NP_001419819.1  uncharacterized protein LOC102557108 isoform c

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001

    6. NM_001432891.1 → NP_001419820.1  uncharacterized protein LOC102557108 isoform d

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      217176490..217223881 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039101338.2 → XP_038957266.1  uncharacterized protein Ms4a20 isoform X3

    2. XM_039101337.2 → XP_038957265.1  uncharacterized protein Ms4a20 isoform X2

    3. XM_063280076.1 → XP_063136146.1  uncharacterized protein Ms4a20 isoform X4

    4. XM_017590305.3 → XP_017445794.1  uncharacterized protein Ms4a20 isoform X1

    5. XM_017590306.3 → XP_017445795.1  uncharacterized protein Ms4a20 isoform X1

      Related
      ENSRNOP00000090389.2, ENSRNOT00000115925.2

    6. XM_063280070.1 → XP_063136140.1  uncharacterized protein Ms4a20 isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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