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    MGC116197 similar to RIKEN cDNA 1700001E04 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 367620, updated on 3-Dec-2024

    Summary

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    Symbol
    MGC116197provided by RGD
    Full Name
    similar to RIKEN cDNA 1700001E04provided by RGD
    Primary source
    RGD:1560404
    See related
    EnsemblRapid:ENSRNOG00000084146 AllianceGenome:RGD:1560404
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1563862
    Expression
    Biased expression in Adrenal (RPKM 311.0), Testes (RPKM 205.2) and 1 other tissue See more
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    Genomic context

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    See MGC116197 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (3109010..3117105)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) Unplaced Scaffold NW_023637854.1 (2114..25024)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (9128416..9143200, complement)

    Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene reticulocalbin 1, pseudogene 18 Neighboring gene poly(rC) binding protein 4, pseudogene 4 Neighboring gene Spetex-2E protein like 7 Neighboring gene PYM homolog 1, exon junction complex associated factor, pseudogene 7 Neighboring gene derlin 1, pseudogene 5 Neighboring gene reticulocalbin 1, pseudogene 11

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC367620

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001025755.3 → NP_001020926.1  uncharacterized protein LOC367620

      See identical proteins and their annotated locations for NP_001020926.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009
      UniProtKB/TrEMBL
      A0A0G2JZD4, Q4QQS5
      Related
      ENSRNOP00000071005.3, ENSRNOT00000089904.3
      Conserved Domains (1) summary
      pfam04822
      Location:49 → 126
      Takusan; Takusan

    2. NM_001429531.1 → NP_001416460.1  uncharacterized protein LOC367620 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009
      UniProtKB/TrEMBL
      A0A0G2JZD4

    3. NM_001429532.1 → NP_001416461.1  uncharacterized protein LOC367620 isoform 3

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009
      UniProtKB/TrEMBL
      A6KPN7

    4. NM_001429535.1 → NP_001416464.1  uncharacterized protein LOC367620 isoform 3

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009
      UniProtKB/TrEMBL
      A6KPN7

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086027.1 Reference GRCr8

      Range
      3109010..3117105
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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