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    Slc35f1 solute carrier family 35, member F1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 502421, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Slc35f1provided by RGD
    Official Full Name
    solute carrier family 35, member F1provided by RGD
    Primary source
    RGD:1559576
    See related
    EnsemblRapid:ENSRNOG00000000412 AllianceGenome:RGD:1559576
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1559576
    Summary
    Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in synaptic vesicle membrane. Orthologous to human SLC35F1 (solute carrier family 35 member F1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 125.6), Heart (RPKM 18.0) and 1 other tissue See more
    Orthologs
    human mouse all
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    Genomic context

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    See Slc35f1 in Genome Data Viewer
    Location:
    20q11
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (32573091..32961466)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (32030350..32418762)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (33772314..34420970)

    Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene NUS1 dehydrodolichyl diphosphate synthase subunit Neighboring gene actin-related protein 2/3 complex subunit 2-like Neighboring gene uncharacterized LOC120098877 Neighboring gene uncharacterized LOC134483927 Neighboring gene uncharacterized LOC120098878 Neighboring gene peroxiredoxin 1, pseudogene 7 Neighboring gene uncharacterized LOC134483813 Neighboring gene centrosomal protein 85-like Neighboring gene phospholamban

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in synaptic vesicle membrane ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    solute carrier family 35 member F1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109338.1 → NP_001102808.1  solute carrier family 35 member F1

      See identical proteins and their annotated locations for NP_001102808.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474016
      UniProtKB/TrEMBL
      A6K487, D3ZFM3
      Related
      ENSRNOP00000000468.8, ENSRNOT00000000468.7
      Conserved Domains (1) summary
      pfam06027
      Location:56 → 355
      SLC35F; Solute carrier family 35

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086038.1 Reference GRCr8

      Range
      32573091..32961466
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039099032.2 → XP_038954960.1  solute carrier family 35 member F1 isoform X1

      Conserved Domains (1) summary
      pfam06027
      Location:1 → 296
      SLC35F; Solute carrier family 35
    Nucleotide Protein Strain
    Heading Accession and Version

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