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    RGD1559536 similar to vitellogenin-like 1 precursor [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498855, updated on 27-Nov-2024

    Summary

    Official Symbol
    RGD1559536provided by RGD
    Official Full Name
    similar to vitellogenin-like 1 precursorprovided by RGD
    Primary source
    RGD:1559536
    See related
    EnsemblRapid:ENSRNOG00000039250 AllianceGenome:RGD:1559536
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Thymus (RPKM 2.6), Heart (RPKM 2.5) and 3 other tissues See more
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    Genomic context

    See RGD1559536 in Genome Data Viewer
    Location:
    18q11
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 18 NC_086036.1 (36739164..36742536, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 18 NC_051353.1 (36488275..36491647, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (42951237..42954609)

    Chromosome 18 - NC_086036.1Genomic Context describing neighboring genes Neighboring gene serine peptidase inhibitor, Kazal type 9 Neighboring gene MARCO like Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene serine protease inhibitor Kazal-type 11-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001195484.1NP_001182413.1  vitellogenin-like 1 precursor

      See identical proteins and their annotated locations for NP_001182413.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000018
      UniProtKB/TrEMBL
      A6KUC4, D3ZIT9
      Related
      ENSRNOP00000056861.2, ENSRNOT00000060113.4
      Conserved Domains (1) summary
      pfam00050
      Location:4085
      Kazal_1; Kazal-type serine protease inhibitor domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086036.1 Reference GRCr8

      Range
      36739164..36742536 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)