Pnma5 PNMA family member 5 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Pnma5provided by RGD
Official Full Name: PNMA family member 5provided by RGD
Primary source: RGD:1565857
See related: EnsemblRapid:ENSRNOG00000058423 AllianceGenome:RGD:1565857
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: RGD1565857
Summary: Predicted to enable identical protein binding activity. Predicted to be involved in meiosis I. Predicted to be active in cell cortex and meiotic spindle. Orthologous to human PNMA5 (PNMA family member 5). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Testes (RPKM 15.9) and Brain (RPKM 4.7) See more
Orthologs: human mouse all
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Genomic context

Location:: Xq37

Exon count:: 1

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	X	NC_086039.1 (155923131..155925055, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	X	NC_051356.1 (150880865..150882789, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	X	NC_005120.4 (153037448..153039372, complement)

Chromosome X - NC_086039.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

RH139174 (e-PCR)
- UniSTS:221260

UniSTS:496785 (e-PCR)
- UniSTS:496785

Pnma3 (e-PCR), detects polymorphism
- UniSTS:496785

RH143166 (e-PCR)
- UniSTS:232413

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables identical protein binding	ISO Inferred from Sequence Orthology more info

Process	Evidence Code	Pubs
involved_in meiosis I	ISO Inferred from Sequence Orthology more info

Component	Evidence Code	Pubs
is_active_in cell cortex	ISO Inferred from Sequence Orthology more info
is_active_in meiotic spindle	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: paraneoplastic antigen-like protein 5

Names: paraneoplastic Ma antigen family member 5; paraneoplastic antigen like 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.