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    Ccdc150 coiled-coil domain containing 150 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 316399, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Ccdc150provided by RGD
    Official Full Name
    coiled-coil domain containing 150provided by RGD
    Primary source
    RGD:1304775
    See related
    EnsemblRapid:ENSRNOG00000013318 AllianceGenome:RGD:1304775
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1304775
    Summary
    Orthologous to human CCDC150 (coiled-coil domain containing 150). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 59.2), Thymus (RPKM 35.0) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ccdc150 in Genome Data Viewer
    Location:
    9q31
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (63287962..63403644)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (55793544..55897341)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (60883966..60989369)

    Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120094686 Neighboring gene serine/threonine kinase 17b Neighboring gene HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 Neighboring gene uncharacterized LOC134480576 Neighboring gene ribosomal protein L31 like 12 Neighboring gene general transcription factor IIIC subunit 3 Neighboring gene similar to human chromosome 2 open reading frame 66 Neighboring gene post-GPI attachment to proteins inositol deacylase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 150

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001412763.1 → NP_001399692.1  coiled-coil domain-containing protein 150 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009
      UniProtKB/TrEMBL
      F1M7H6

    2. NM_001428842.1 → NP_001415771.1  coiled-coil domain-containing protein 150 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009
      UniProtKB/TrEMBL
      F1M7H6

    3. NM_001428847.1 → NP_001415776.1  coiled-coil domain-containing protein 150 isoform 3

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009
      UniProtKB/TrEMBL
      A0A0G2K3C9, F1M7H6

    4. NM_001428848.1 → NP_001415777.1  coiled-coil domain-containing protein 150 isoform 4

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009
      UniProtKB/TrEMBL
      F1M7H6

    5. NM_001428849.1 → NP_001415778.1  coiled-coil domain-containing protein 150 isoform 5

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009
      UniProtKB/TrEMBL
      F1M7H6

    6. NM_001428850.1 → NP_001415779.1  coiled-coil domain-containing protein 150 isoform 6

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009
      UniProtKB/TrEMBL
      F1M7H6

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086027.1 Reference GRCr8

      Range
      63287962..63403644
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039083603.2 → XP_038939531.1  coiled-coil domain-containing protein 150 isoform X1

      UniProtKB/TrEMBL
      F1M7H6
      Conserved Domains (2) summary
      PTZ00121
      Location:547 → 1028
      PTZ00121; MAEBL; Provisional
      COG1196
      Location:163 → 899
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    2. XM_039083607.2 → XP_038939535.1  coiled-coil domain-containing protein 150 isoform X7

      UniProtKB/TrEMBL
      F1M7H6
      Conserved Domains (2) summary
      COG1196
      Location:153 → 860
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02169
      Location:735 → 1011
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

    3. XM_063267174.1 → XP_063123244.1  coiled-coil domain-containing protein 150 isoform X6

    4. XM_008767095.4 → XP_008765317.1  coiled-coil domain-containing protein 150 isoform X3

      Related
      ENSRNOP00000017859.7, ENSRNOT00000017859.7
      Conserved Domains (2) summary
      PTZ00121
      Location:547 → 1032
      PTZ00121; MAEBL; Provisional
      pfam15921
      Location:137 → 651
      CCDC158; Coiled-coil domain-containing protein 158

    5. XM_039083608.2 → XP_038939536.1  coiled-coil domain-containing protein 150 isoform X9

      UniProtKB/TrEMBL
      F1M7H6
      Conserved Domains (1) summary
      TIGR02168
      Location:152 → 950
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    6. XM_008767096.4 → XP_008765318.1  coiled-coil domain-containing protein 150 isoform X10

      Related
      ENSRNOP00000109542.1, ENSRNOT00000148114.1
      Conserved Domains (1) summary
      COG1196
      Location:163 → 899
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    7. XM_039083604.2 → XP_038939532.1  coiled-coil domain-containing protein 150 isoform X2

      UniProtKB/TrEMBL
      F1M7H6
      Conserved Domains (2) summary
      COG1196
      Location:163 → 898
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      TIGR02169
      Location:773 → 1049
      SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

    8. XM_063267177.1 → XP_063123247.1  coiled-coil domain-containing protein 150 isoform X11

    9. XM_063267175.1 → XP_063123245.1  coiled-coil domain-containing protein 150 isoform X8

      Related
      ENSRNOP00000072587.2, ENSRNOT00000081002.3

    10. XM_063267178.1 → XP_063123248.1  coiled-coil domain-containing protein 150 isoform X12

    11. XM_039083610.2 → XP_038939538.1  coiled-coil domain-containing protein 150 isoform X13

      Conserved Domains (1) summary
      COG1196
      Location:153 → 806
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    12. XM_039083606.2 → XP_038939534.1  coiled-coil domain-containing protein 150 isoform X5

      UniProtKB/TrEMBL
      F1M7H6
      Conserved Domains (2) summary
      PTZ00121
      Location:526 → 1001
      PTZ00121; MAEBL; Provisional
      TIGR02168
      Location:131 → 893
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    13. XM_039083605.2 → XP_038939533.1  coiled-coil domain-containing protein 150 isoform X4

      UniProtKB/TrEMBL
      F1M7H6
      Conserved Domains (2) summary
      PTZ00121
      Location:543 → 1018
      PTZ00121; MAEBL; Provisional
      COG1196
      Location:159 → 895
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]

    14. XM_039083611.2 → XP_038939539.1  coiled-coil domain-containing protein 150 isoform X14

      Conserved Domains (1) summary
      PTZ00121
      Location:106 → 510
      PTZ00121; MAEBL; Provisional

    15. XM_039083613.2 → XP_038939541.1  coiled-coil domain-containing protein 150 isoform X15

      UniProtKB/TrEMBL
      A0A8I5ZKR5, A6INZ6
      Related
      ENSRNOP00000078352.1, ENSRNOT00000113546.2
      Conserved Domains (1) summary
      PTZ00121
      Location:106 → 520
      PTZ00121; MAEBL; Provisional

    RNA

    1. XR_010054598.1 RNA Sequence

    2. XR_010054599.1 RNA Sequence

    3. XR_010054600.1 RNA Sequence

    4. XR_010054601.1 RNA Sequence

    5. XR_010054604.1 RNA Sequence

    6. XR_594389.4 RNA Sequence

    7. XR_005488902.2 RNA Sequence

    8. XR_010054602.1 RNA Sequence

    9. XR_594387.4 RNA Sequence

    10. XR_005488904.2 RNA Sequence

    11. XR_010054603.1 RNA Sequence

    12. XR_005488907.2 RNA Sequence

    13. XR_005488906.2 RNA Sequence

    14. XR_010054605.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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