U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Vom1r47 vomeronasal 1 receptor 47 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 494266, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Symbol
    Vom1r47provided by RGD
    Full Name
    vomeronasal 1 receptor 47provided by RGD
    Primary source
    RGD:1359700
    See related
    EnsemblRapid:ENSRNOG00000067569 AllianceGenome:RGD:1359700
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    V1rg9; V1rg14
    Summary
    Predicted to enable pheromone receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; response to pheromone; and sensory perception of chemical stimulus. Predicted to be located in plasma membrane. [provided by Alliance of Genome Resources, Dec 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Vom1r47 in Genome Data Viewer
    Location:
    1q21
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (81469693..81599612, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (72398402..72402091, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (67025240..67026154)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene vomeronasal 1 receptor pseudogene 51 Neighboring gene vomeronasal 1 receptor 46 Neighboring gene vomeronasal 1 receptor pseudogene 52 Neighboring gene vomeronasal 1 receptor pseudogene 53 Neighboring gene vomeronasal 1 receptor 113 Neighboring gene vomeronasal 1 receptor 49 Neighboring gene ribosomal protein L36A like 2 Neighboring gene vomeronasal 1 receptor 50 Neighboring gene vomeronasal 1 receptor pseudogene 54 Neighboring gene zinc finger protein 551

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Extreme variability among mammalian V1R gene families. Young JM, et al. Genome Res, 2010 Jan. PMID 19952141, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables pheromone receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in G protein-coupled receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in response to pheromone IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in sensory perception of chemical stimulus IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    vomeronasal 1 receptor 47
    Names
    vomernasal 1 receptor Vom1r47
    vomeronasal 1 receptor, G9
    vomeronasal V1r-type receptor V1rg14
    vomeronasal V1r-type receptor V1rg9
    vomeronasal type-1 receptor 3

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001008916.2 → NP_001008916.1  vomeronasal 1 receptor 47

      See identical proteins and their annotated locations for NP_001008916.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A0A8I6AMW8, A6KQP2
      Related
      ENSRNOP00000095988.1, ENSRNOT00000099659.2

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      81469693..81599612 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063270359.1 → XP_063126429.1  vomeronasal 1 receptor 47 isoform X1

    2. XM_063270367.1 → XP_063126437.1  vomeronasal 1 receptor 47 isoform X1

    3. XM_063270370.1 → XP_063126440.1  vomeronasal 1 receptor 47 isoform X1

      UniProtKB/TrEMBL
      A0A8I6AMW8, A6KQP2
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools