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    Wdr93 WD repeat domain 93 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 499189, updated on 4-Jan-2025

    Summary

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    Official Symbol
    Wdr93provided by RGD
    Official Full Name
    WD repeat domain 93provided by RGD
    Primary source
    RGD:1559862
    See related
    EnsemblRapid:ENSRNOG00000026514 AllianceGenome:RGD:1559862
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1559862
    Summary
    Predicted to be involved in electron transport chain. Predicted to be part of respiratory chain complex I. Orthologous to human WDR93 (WD repeat domain 93). [provided by Alliance of Genome Resources, Jan 2025]
    Expression
    Biased expression in Testes (RPKM 36.2), Kidney (RPKM 13.9) and 7 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Wdr93 in Genome Data Viewer
    Location:
    1q31
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (143096569..143146548)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (133687254..133737449)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (141481353..141531254)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene perilipin 1 Neighboring gene peroxisomal biogenesis factor 11 alpha Neighboring gene small nuclear ribonucleoprotein polypeptide E like 2 Neighboring gene mesoderm posterior bHLH transcription factor 1 Neighboring gene mesoderm posterior bHLH transcription factor 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in electron transport chain IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of respiratory chain complex I IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    WD repeat-containing protein 93

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191949.2 → NP_001178878.1  WD repeat-containing protein 93

      See identical proteins and their annotated locations for NP_001178878.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      D3ZYU1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      143096569..143146548
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017589563.3 → XP_017445052.1  WD repeat-containing protein 93 isoform X3

    2. XM_063271151.1 → XP_063127221.1  WD repeat-containing protein 93 isoform X2

    3. XM_039087607.2 → XP_038943535.1  WD repeat-containing protein 93 isoform X4

    4. XM_063271180.1 → XP_063127250.1  WD repeat-containing protein 93 isoform X6

    5. XM_063271188.1 → XP_063127258.1  WD repeat-containing protein 93 isoform X7

    6. XM_017589562.3 → XP_017445051.1  WD repeat-containing protein 93 isoform X1

      UniProtKB/TrEMBL
      D3ZYU1

    7. XM_063271156.1 → XP_063127226.1  WD repeat-containing protein 93 isoform X2

    8. XM_006229403.5 → XP_006229465.1  WD repeat-containing protein 93 isoform X1

      See identical proteins and their annotated locations for XP_006229465.1

      UniProtKB/TrEMBL
      D3ZYU1
      Related
      ENSRNOP00000032416.5, ENSRNOT00000034042.7

    9. XM_039087609.2 → XP_038943537.1  WD repeat-containing protein 93 isoform X5

    RNA

    1. XR_005490605.2 RNA Sequence

    2. XR_010056371.1 RNA Sequence

    3. XR_001835468.3 RNA Sequence

    4. XR_010056372.1 RNA Sequence

    5. XR_010056373.1 RNA Sequence

    6. XR_010056374.1 RNA Sequence

    7. XR_005490647.2 RNA Sequence

    8. XR_005490640.2 RNA Sequence

    9. XR_010056377.1 RNA Sequence

    10. XR_010056376.1 RNA Sequence

    11. XR_010056378.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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