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    Tpd52l3 TPD52 like 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 293894, updated on 9-Dec-2024

    Summary

    Symbol
    Tpd52l3provided by RGD
    Full Name
    TPD52 like 3provided by RGD
    Primary source
    RGD:1309391
    See related
    EnsemblRapid:ENSRNOG00000042441 AllianceGenome:RGD:1309391
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Trpd52l3; RGD1309391
    Summary
    Predicted to be active in cytoplasm. Orthologous to human TPD52L3 (TPD52 like 3). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 24.4), Spleen (RPKM 11.0) and 5 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Tpd52l3 in Genome Data Viewer
    Location:
    1q52
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (237195695..237197988)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (227781173..227785040)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (248187429..248202090)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene tRNA methyltransferase 6, pseudogene 1 Neighboring gene interleukin 33 Neighboring gene uncharacterized LOC134485220 Neighboring gene uncharacterized LOC120100019 Neighboring gene eukaryotic translation elongation factor 1 beta 2, pseudogene 3 Neighboring gene ubiquitin like with PHD and ring finger domains 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    tumor protein D55
    Names
    tumor protein D52-like 3
    tumor protein D55-like

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106349.1NP_001099819.1  tumor protein D55

      See identical proteins and their annotated locations for NP_001099819.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473953
      UniProtKB/TrEMBL
      A6I0X7
      Conserved Domains (1) summary
      pfam04201
      Location:58205
      TPD52; tumor protein D52 family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      237195695..237197988
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006231260.5XP_006231322.1  tumor protein D55 isoform X1

      See identical proteins and their annotated locations for XP_006231322.1

      UniProtKB/TrEMBL
      A0A0G2QC54
      Related
      ENSRNOP00000106320.1, ENSRNOT00000121822.1
      Conserved Domains (1) summary
      pfam04201
      Location:58205
      TPD52; Tumour protein D52 family