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    Clasrp CLK4-associating serine/arginine rich protein [ Rattus norvegicus (Norway rat) ]

    Gene ID: 499390, updated on 9-Dec-2024

    Summary

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    Symbol
    Clasrpprovided by RGD
    Full Name
    CLK4-associating serine/arginine rich proteinprovided by RGD
    Primary source
    RGD:1563538
    See related
    EnsemblRapid:ENSRNOG00000046000 AllianceGenome:RGD:1563538
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Sfrs16; Srsf16
    Summary
    Predicted to be involved in RNA splicing and mRNA processing. Predicted to be located in nucleoplasm. Orthologous to human CLASRP (CLK4 associating serine/arginine rich protein). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 83.6), Lung (RPKM 58.7) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Clasrp in Genome Data Viewer
    Location:
    1q21
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (88360235..88384343, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (79232260..79256462, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (80491520..80515761, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene gem (nuclear organelle) associated protein 7 Neighboring gene zinc finger protein 296 Neighboring gene RELB proto-oncogene, NF-kB subunit Neighboring gene CLPTM1 regulator of GABA type A receptor forward trafficking Neighboring gene uncharacterized LOC134482894

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in RNA splicing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in mRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    CLK4-associating serine/arginine rich protein
    Names
    serine/arginine-rich splicing factor 16
    splicing factor, arginine/serine-rich 16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024294.2 → NP_001019465.2  CLK4-associating serine/arginine rich protein

      See identical proteins and their annotated locations for NP_001019465.2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/Swiss-Prot
      Q5HZB6
      UniProtKB/TrEMBL
      A0A8L2RAC0
      Related
      ENSRNOP00000066334.1, ENSRNOT00000075144.4
      Conserved Domains (1) summary
      pfam09750
      Location:41 → 169
      DRY_EERY; Alternative splicing regulator

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      88360235..88384343 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063271793.1 → XP_063127863.1  CLK4-associating serine/arginine rich protein isoform X1

      UniProtKB/TrEMBL
      A6J8Q3

    2. XM_063271795.1 → XP_063127865.1  CLK4-associating serine/arginine rich protein isoform X2

      UniProtKB/TrEMBL
      A6J8Q4
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5HZB6.2 GenPept UniProtKB/Swiss-Prot:Q5HZB6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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