U.S. flag

An official website of the United States government

Links from GEO Profiles

    • Showing Current items.

    Zswim6 zinc finger, SWIM-type containing 6 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 310062, updated on 9-Dec-2024

    Summary

    Official Symbol
    Zswim6provided by RGD
    Official Full Name
    zinc finger, SWIM-type containing 6provided by RGD
    Primary source
    RGD:1306624
    See related
    EnsemblRapid:ENSRNOG00000014528 AllianceGenome:RGD:1306624
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Ab2-064
    Summary
    Predicted to be involved in striatal medium spiny neuron differentiation. Predicted to act upstream of or within neuron projection morphogenesis and regulation of neuron migration. Predicted to be located in stereocilium. Predicted to be part of Cul2-RING ubiquitin ligase complex. Human ortholog(s) of this gene implicated in acromelic frontonasal dysostosis. Orthologous to human ZSWIM6 (zinc finger SWIM-type containing 6). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 68.9), Spleen (RPKM 53.2) and 9 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Zswim6 in Genome Data Viewer
    Location:
    2q14
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (40944617..41112340, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (39211131..39378877, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (38978042..39042886, complement)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134485595 Neighboring gene uncharacterized LOC103691449 Neighboring gene uncharacterized LOC120100700 Neighboring gene uncharacterized LOC120100701

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    part_of Cul2-RING ubiquitin ligase complex  
    located_in membrane  
    located_in stereocilium  

    General protein information

    Preferred Names
    zinc finger SWIM domain-containing protein 6
    Names
    zinc finger, SWIM domain containing 6

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001433121.1NP_001420050.1  zinc finger SWIM domain-containing protein 6 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000002
    2. NM_001433122.1NP_001420051.1  zinc finger SWIM domain-containing protein 6 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000002

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      40944617..41112340 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039103499.2XP_038959427.2  zinc finger SWIM domain-containing protein 6 isoform X1

      Related
      ENSRNOP00000059251.4, ENSRNOT00000064292.5
    2. XM_063282687.1XP_063138757.1  zinc finger SWIM domain-containing protein 6 isoform X2

      UniProtKB/TrEMBL
      A6I5J1, Q7TP63
    3. XM_063282688.1XP_063138758.1  zinc finger SWIM domain-containing protein 6 isoform X3

      UniProtKB/TrEMBL
      F1M5P6, Q7TP63

    RNA

    1. XR_010063737.1 RNA Sequence

    External link. Please review our privacy policy.