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    Mtrfr mitochondrial translation release factor in rescue [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498179, updated on 9-Dec-2024

    Summary

    Symbol
    Mtrfrprovided by RGD
    Full Name
    mitochondrial translation release factor in rescueprovided by RGD
    Primary source
    RGD:1563482
    See related
    EnsemblRapid:ENSRNOG00000001073 AllianceGenome:RGD:1563482
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1563482
    Summary
    Predicted to enable ribosomal large subunit binding activity and tRNA binding activity. Predicted to be involved in rescue of stalled ribosome. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 7 and hereditary spastic paraplegia 55. Orthologous to human MTRFR (mitochondrial translation release factor in rescue). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Heart (RPKM 63.6), Muscle (RPKM 62.8) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Mtrfr in Genome Data Viewer
    Location:
    12q15
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (37922532..37936219, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (32261569..32275258, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (37680152..37682994, complement)

    Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene strawberry notch homolog 1 Neighboring gene cyclin-dependent kinase 2 associated protein 1 Neighboring gene M-phase phosphoprotein 9 Neighboring gene phosphatidylinositol transfer protein, membrane-associated 2 Neighboring gene uncharacterized LOC134481294

    Genomic regions, transcripts, and products

    General gene information

    Markers

    Clone Names

    • MGC187978

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables ribosomal large subunit binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables tRNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables translation release factor activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in rescue of stalled ribosome ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in translational termination IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    mitochondrial translation release factor in rescue
    Names
    probable peptide chain release factor C12orf65 homolog, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109065.2NP_001102535.2  mitochondrial translation release factor in rescue

      See identical proteins and their annotated locations for NP_001102535.2

      Status: VALIDATED

      Source sequence(s)
      BC168187, BF417004
      UniProtKB/TrEMBL
      A6J104, F1LWN5, F1M2Z8, I6L9K3
      Related
      ENSRNOP00000071132.1, ENSRNOT00000077803.3
      Conserved Domains (1) summary
      pfam00472
      Location:55116
      RF-1; RF-1 domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086030.1 Reference GRCr8

      Range
      37922532..37936219 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)