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    Ly6l lymphocyte antigen 6 family member L [ Rattus norvegicus (Norway rat) ]

    Gene ID: 686432, updated on 9-Dec-2024

    Summary

    Official Symbol
    Ly6lprovided by RGD
    Official Full Name
    lymphocyte antigen 6 family member Lprovided by RGD
    Primary source
    RGD:1597652
    See related
    AllianceGenome:RGD:1597652
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human LY6L (lymphocyte antigen 6 family member L). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 211.8) and Kidney (RPKM 45.8) See more
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    Genomic context

    See Ly6l in Genome Data Viewer
    Location:
    7q34
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (109101360..109103440)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (107220612..107222692)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (116444786..116447400)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene Ly6-C antigen like 1 Neighboring gene lymphocyte antigen 6L-like Neighboring gene lymphocyte antigen 6 complex, locus A-like Neighboring gene lymphocyte antigen 6 family member H Neighboring gene glycosylphosphatidylinositol anchored high density lipoprotein binding protein 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in plasma membrane  
    located_in plasma membrane  
    located_in side of membrane  

    General protein information

    Preferred Names
    lymphocyte antigen 6 family member L
    Names
    lymphocyte antigen 6 complex, locus L
    lymphocyte antigen 6H
    lymphocyte antigen 6L

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001408784.1NP_001395713.1  lymphocyte antigen 6 family member L precursor

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000007
      UniProtKB/TrEMBL
      A0A8I6G6H8

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      109101360..109103440
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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