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    C16h8orf48 similar to human chromosome 8 open reading frame 48 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 688765, updated on 9-Dec-2024

    Summary

    Official Symbol
    C16h8orf48provided by RGD
    Official Full Name
    similar to human chromosome 8 open reading frame 48provided by RGD
    Primary source
    RGD:1585243
    See related
    EnsemblRapid:ENSRNOG00000032376 AllianceGenome:RGD:1585243
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human C8orf48 (chromosome 8 open reading frame 48). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 47.3), Kidney (RPKM 29.4) and 9 other tissues See more
    Orthologs
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    Genomic context

    See C16h8orf48 in Genome Data Viewer
    Location:
    16q12.1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (61948170..61950066, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (55244744..55246642, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (58729775..58731673, complement)

    Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene voltage-dependent anion channel 1, pseudogene 4 Neighboring gene uncharacterized LOC134482390 Neighboring gene DLC1 Rho GTPase activating protein Neighboring gene uncharacterized LOC134482391 Neighboring gene uncharacterized LOC108348402

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    uncharacterized protein C8orf48 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109512.1 → NP_001102982.1  uncharacterized protein C8orf48 homolog

      See identical proteins and their annotated locations for NP_001102982.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473970
      UniProtKB/TrEMBL
      A0A8I5XVC1, A6IVJ5
      Related
      ENSRNOP00000088270.1, ENSRNOT00000042908.6
      Conserved Domains (1) summary
      pfam15379
      Location:174 → 276
      DUF4606; Domain of unknown function (DUF4606)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086034.1 Reference GRCr8

      Range
      61948170..61950066 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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