Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Crybb2 crystallin, beta B2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 25422, updated on 9-Dec-2024

    Summary

    Official Symbol
    Crybb2provided by RGD
    Official Full Name
    crystallin, beta B2provided by RGD
    Primary source
    RGD:2417
    See related
    EnsemblRapid:ENSRNOG00000050023 AllianceGenome:RGD:2417
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable identical protein binding activity. Predicted to be a structural constituent of eye lens. Involved in camera-type eye development. Human ortholog(s) of this gene implicated in cataract and cataract 3 multiple types. Orthologous to human CRYBB2 (crystallin beta B2). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Crybb2 in Genome Data Viewer
    Location:
    12q16
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (49230192..49240116)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (43569747..43579671)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (49577580..49588555)

    Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene KIAA1671 homolog Neighboring gene uncharacterized LOC102552141 Neighboring gene crystallin, beta B3 Neighboring gene uncharacterized LOC134481309 Neighboring gene G protein-coupled receptor kinase 3 Neighboring gene uncharacterized LOC134481310 Neighboring gene myosin XVIIIb

    Genomic regions, transcripts, and products

    Pathways from PubChem

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables structural constituent of eye lens IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables structural constituent of eye lens ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in camera-type eye development IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    acts_upstream_of_or_within camera-type eye development ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in lens development in camera-type eye IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in visual perception IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within visual perception ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    beta-crystallin B2
    Names
    R.norvegicus CRYBB2 gene (crystallin, beta B2)
    beta-B2 crystallin
    beta-crystallin Bp

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_012937.2NP_037069.1  beta-crystallin B2

      See identical proteins and their annotated locations for NP_037069.1

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000012
      UniProtKB/Swiss-Prot
      P19942, P26775, P62697
      UniProtKB/TrEMBL
      A6J243
      Related
      ENSRNOP00000067708.1, ENSRNOT00000072683.3
      Conserved Domains (2) summary
      smart00247
      Location:18100
      XTALbg; Beta/gamma crystallins
      pfam00030
      Location:108190
      Crystall; Beta/Gamma crystallin

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086030.1 Reference GRCr8

      Range
      49230192..49240116
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)