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    Nudcd1 NudC domain containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362906, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Nudcd1provided by RGD
    Official Full Name
    NudC domain containing 1provided by RGD
    Primary source
    RGD:1310624
    See related
    EnsemblRapid:ENSRNOG00000024929 AllianceGenome:RGD:1310624
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1310624
    Summary
    Predicted to be located in cytosol and nucleoplasm. Orthologous to human NUDCD1 (NudC domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Adrenal (RPKM 78.7), Testes (RPKM 70.9) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Nudcd1 in Genome Data Viewer
    Location:
    7q31
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (77436035..77480651, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (75550650..75595976, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (83302778..83348534, complement)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene thyrotropin releasing hormone receptor Neighboring gene small nucleolar RNA SNORA17 Neighboring gene ENY2, transcription and export complex 2 subunit Neighboring gene PKHD1 like 1 Neighboring gene estrogen receptor binding site associated antigen 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    nudC domain-containing protein 1
    NP_001124033.1
    XP_006241676.1
    XP_038935443.1
    XP_063119907.1
    XP_063119908.1
    XP_063119910.1
    XP_063119911.1
    XP_063119912.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001130561.2 → NP_001124033.1  nudC domain-containing protein 1

      See identical proteins and their annotated locations for NP_001124033.1

      Status: PROVISIONAL

      Source sequence(s)
      BC169014
      UniProtKB/TrEMBL
      A0A9K3Y8F7, B5DFD1, F7F163
      Related
      ENSRNOP00000091595.2, ENSRNOT00000102595.2
      Conserved Domains (1) summary
      cl00175
      Location:275 → 358
      alpha-crystallin-Hsps_p23-like; alpha-crystallin domain (ACD) found in alpha-crystallin-type small heat shock proteins, and a similar domain found in p23 (a cochaperone for Hsp90) and in other p23-like proteins.

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      77436035..77480651 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006241614.5 → XP_006241676.1  nudC domain-containing protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8I6AGF4
      Conserved Domains (1) summary
      cl00175
      Location:274 → 357
      alpha-crystallin-Hsps_p23-like; alpha-crystallin domain (ACD) found in alpha-crystallin-type small heat shock proteins, and a similar domain found in p23 (a cochaperone for Hsp90) and in other p23-like proteins.

    2. XM_063263838.1 → XP_063119908.1  nudC domain-containing protein 1 isoform X3

    3. XM_063263837.1 → XP_063119907.1  nudC domain-containing protein 1 isoform X2

      Related
      ENSRNOP00000006685.7, ENSRNOT00000006685.7

    4. XM_063263841.1 → XP_063119911.1  nudC domain-containing protein 1 isoform X6

    5. XM_039079515.2 → XP_038935443.1  nudC domain-containing protein 1 isoform X4

      Conserved Domains (1) summary
      cl00175
      Location:124 → 207
      alpha-crystallin-Hsps_p23-like; alpha-crystallin domain (ACD) found in alpha-crystallin-type small heat shock proteins, and a similar domain found in p23 (a cochaperone for Hsp90) and in other p23-like proteins.

    6. XM_063263842.1 → XP_063119912.1  nudC domain-containing protein 1 isoform X7

    7. XM_063263840.1 → XP_063119910.1  nudC domain-containing protein 1 isoform X5

    Nucleotide Protein Strain
    Heading Accession and Version

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