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    Tmem215 transmembrane protein 215 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 690918, updated on 9-Dec-2024

    Summary

    Official Symbol
    Tmem215provided by RGD
    Official Full Name
    transmembrane protein 215provided by RGD
    Primary source
    RGD:1589861
    See related
    EnsemblRapid:ENSRNOG00000042246 AllianceGenome:RGD:1589861
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to act upstream of or within negative regulation of retinal cell programmed cell death and sprouting angiogenesis. Orthologous to human TMEM215 (transmembrane protein 215). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 15.4), Thymus (RPKM 9.6) and 5 other tissues See more
    Orthologs
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    Genomic context

    See Tmem215 in Genome Data Viewer
    Location:
    5q22
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (60408587..60411841)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (55612568..55615828)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (56797502..56800759)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134478961 Neighboring gene Sec61 translocon subunit gamma, pseudogene 8 Neighboring gene SUMO-conjugating enzyme UBC9-like Neighboring gene ribosomal protein L24, pseudogene 4

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109613.1NP_001103083.1  transmembrane protein 215

      See identical proteins and their annotated locations for NP_001103083.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473962
      UniProtKB/TrEMBL
      A6IIR5, D3ZI94
      Related
      ENSRNOP00000106196.1, ENSRNOT00000159113.1
      Conserved Domains (1) summary
      pfam15746
      Location:1235
      TMEM215; TMEM215 family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      60408587..60411841
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)