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    Lrrc20 leucine rich repeat containing 20 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 499430, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Lrrc20provided by RGD
    Official Full Name
    leucine rich repeat containing 20provided by RGD
    Primary source
    RGD:1566140
    See related
    EnsemblRapid:ENSRNOG00000000560 AllianceGenome:RGD:1566140
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1566140
    Summary
    Orthologous to human LRRC20 (leucine rich repeat containing 20). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Muscle (RPKM 233.3), Heart (RPKM 60.8) and 7 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Lrrc20 in Genome Data Viewer
    Location:
    20q11
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 20 NC_086038.1 (29965673..30071185)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 20 NC_051355.1 (29422858..29528372)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 20 NC_005119.4 (31069406..31202502)

    Chromosome 20 - NC_086038.1Genomic Context describing neighboring genes Neighboring gene eukaryotic translation initiation factor 4E binding protein 2 Neighboring gene cysteine and glycine-rich protein 2, pseudogene 1 Neighboring gene ribosomal protein L27, pseudogene 8 Neighboring gene uncharacterized LOC134483917 Neighboring gene neuropeptide FF receptor 1 Neighboring gene inorganic pyrophosphatase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    leucine-rich repeat-containing protein 20

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109171.1 → NP_001102641.1  leucine-rich repeat-containing protein 20

      See identical proteins and their annotated locations for NP_001102641.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474016
      UniProtKB/TrEMBL
      A0A0G2K395, A6K400, F1LUD9
      Related
      ENSRNOP00000000676.6, ENSRNOT00000000676.9
      Conserved Domains (4) summary
      cd00116
      Location:27 → 159
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00031
      Location:76 → 98
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:26 → 51
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:98 → 156
      LRR_8; Leucine rich repeat

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086038.1 Reference GRCr8

      Range
      29965673..30071185
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006256465.3 → XP_006256527.1  leucine-rich repeat-containing protein 20 isoform X1

      See identical proteins and their annotated locations for XP_006256527.1

      Conserved Domains (4) summary
      cd00116
      Location:26 → 160
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00031
      Location:76 → 98
      LRR_1; leucine-rich repeat [structural motif]
      sd00033
      Location:26 → 51
      LRR_RI; leucine-rich repeat [structural motif]
      pfam13855
      Location:74 → 132
      LRR_8; Leucine rich repeat

    2. XM_063279468.1 → XP_063135538.1  leucine-rich repeat-containing protein 20 isoform X2

      UniProtKB/TrEMBL
      A0A0G2K395, A6K400, F1LUD9

    3. XM_039099014.2 → XP_038954942.1  leucine-rich repeat-containing protein 20 isoform X3

      Conserved Domains (2) summary
      PLN03150
      Location:20 → 92
      PLN03150; hypothetical protein; Provisional
      sd00031
      Location:7 → 29
      LRR_1; leucine-rich repeat [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version

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