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    Actrt3 actin-related protein T3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 365763, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Actrt3provided by RGD
    Official Full Name
    actin-related protein T3provided by RGD
    Primary source
    RGD:1561457
    See related
    EnsemblRapid:ENSRNOG00000027908 AllianceGenome:RGD:1561457
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Arpm1; RGD1561457
    Summary
    Predicted to be located in male germ cell nucleus. Predicted to be active in actin cytoskeleton. Orthologous to human ACTRT3 (actin related protein T3). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 270.1) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Actrt3 in Genome Data Viewer
    Location:
    2q24
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (114727534..114729561)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (112799038..112801065)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (116416561..116418521)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene leucine-rich repeats and IQ motif containing 4 Neighboring gene leucine rich repeat containing 34 Neighboring gene myoneurin Neighboring gene transfer RNA valine (anticodon AAC) 1 Neighboring gene serine/arginine-rich splicing factor 7 pseudogene Neighboring gene telomerase RNA component

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Nuclear localization of profilin III-ArpM1 complex in mouse spermiogenesis. Hara Y, et al. FEBS Lett, 2008 Sep 3. PMID 18692047
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in actin cytoskeleton IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in male germ cell nucleus ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    actin-related protein T3
    Names
    actin related protein M1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108942.2 → NP_001102412.1  actin-related protein T3

      See identical proteins and their annotated locations for NP_001102412.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000002
      UniProtKB/TrEMBL
      A6IHM2, D4ABA6
      Related
      ENSRNOP00000038451.3, ENSRNOT00000030700.6
      Conserved Domains (2) summary
      smart00268
      Location:5 → 371
      ACTIN; Actin
      cl17037
      Location:9 → 371
      NBD_sugar-kinase_HSP70_actin; Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      114727534..114729561
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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