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    Zfp717 zinc finger protein 717 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100361503, updated on 9-Dec-2024

    Summary

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    Symbol
    Zfp717provided by RGD
    Full Name
    zinc finger protein 717provided by RGD
    Primary source
    RGD:2319964
    See related
    EnsemblRapid:ENSRNOG00000014331 AllianceGenome:RGD:2319964
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Zfp810; Zfp970
    Summary
    Predicted to enable metal ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 145.1), Kidney (RPKM 99.4) and 9 other tissues See more
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    Genomic context

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    See Zfp717 in Genome Data Viewer
    Location:
    8q13
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (29073713..29109533, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (20798650..20833529, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (23275947..23311725, complement)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene telomerase RNA component interacting RNase, pseudogene 1 Neighboring gene zinc finger protein 599 Neighboring gene uncharacterized LOC134480148 Neighboring gene small nucleolar RNA SNORA70 Neighboring gene anillin, actin binding protein Neighboring gene microtubule associated tyrosine carboxypeptidase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. A novel profile of expressed sequence tags for zinc finger encoding genes from the poorly differentiated exocrine pancreatic cell line AR4IP. Gebelein B, et al. Cancer Lett, 1996 Aug 2. PMID 8697448
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 809; zinc finger protein 810; zinc finger protein OZF
    Names
    rCG31861-like
    zinc finger protein 157
    zinc finger protein 39-like
    zinc finger protein 970
    zinc finger protein ZFP

    NCBI Reference Sequences (RefSeq)

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    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001433393.1 → NP_001420322.1  zinc finger protein 810 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008
      UniProtKB/TrEMBL
      A6JNZ8, F1M829

    2. NM_001433394.1 → NP_001420323.1  zinc finger protein 810 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008
      UniProtKB/TrEMBL
      A6JNZ8, F1M829

    3. NM_001433395.1 → NP_001420324.1  zinc finger protein 810 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008
      UniProtKB/TrEMBL
      A6JNZ8, F1M829

    4. NM_001433396.1 → NP_001420325.1  zinc finger protein 810 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008
      UniProtKB/TrEMBL
      A6JNZ8, F1M829

    5. NM_001433397.1 → NP_001420326.1  zinc finger protein 810 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008
      UniProtKB/TrEMBL
      A6JNZ8, F1M829

    6. NM_001433398.1 → NP_001420327.1  zinc finger protein 810 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008
      UniProtKB/TrEMBL
      A6JNZ8, F1M829

    7. NM_001433399.1 → NP_001420328.1  zinc finger protein 810 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008
      UniProtKB/TrEMBL
      A6JNZ8, F1M829

    8. NM_001433400.1 → NP_001420329.1  zinc finger protein 810 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008
      UniProtKB/TrEMBL
      A6JNZ8, F1M829

    9. NM_001433401.1 → NP_001420330.1  zinc finger protein 810 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008
      UniProtKB/TrEMBL
      A6JNZ8, F1M829

    10. NM_001433402.1 → NP_001420331.1  zinc finger protein 810 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008
      UniProtKB/TrEMBL
      A6JNZ8, F1M829

    11. NM_001433403.1 → NP_001420332.1  zinc finger protein 810 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008
      UniProtKB/TrEMBL
      A6JNZ8, F1M829

    12. NM_001433404.1 → NP_001420333.1  zinc finger protein 810 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      29073713..29109533 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063266373.1 → XP_063122443.1  zinc finger protein 809 isoform X2

    2. XM_039082264.2 → XP_038938192.1  zinc finger protein OZF isoform X1

      Conserved Domains (4) summary
      smart00349
      Location:4 → 59
      KRAB; krueppel associated box
      COG5048
      Location:194 → 391
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:184 → 204
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:393 → 415
      zf-H2C2_2; Zinc-finger double domain

    3. XM_008766014.4 → XP_008764236.1  zinc finger protein OZF isoform X1

      Conserved Domains (4) summary
      smart00349
      Location:4 → 59
      KRAB; krueppel associated box
      COG5048
      Location:194 → 391
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:184 → 204
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:393 → 415
      zf-H2C2_2; Zinc-finger double domain

    4. XM_039082263.2 → XP_038938191.1  zinc finger protein OZF isoform X1

      Conserved Domains (4) summary
      smart00349
      Location:4 → 59
      KRAB; krueppel associated box
      COG5048
      Location:194 → 391
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:184 → 204
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:393 → 415
      zf-H2C2_2; Zinc-finger double domain

    5. XM_008766015.4 → XP_008764237.1  zinc finger protein OZF isoform X1

      Conserved Domains (4) summary
      smart00349
      Location:4 → 59
      KRAB; krueppel associated box
      COG5048
      Location:194 → 391
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:184 → 204
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:393 → 415
      zf-H2C2_2; Zinc-finger double domain

    6. XM_008766012.4 → XP_008764234.1  zinc finger protein OZF isoform X1

      Conserved Domains (4) summary
      smart00349
      Location:4 → 59
      KRAB; krueppel associated box
      COG5048
      Location:194 → 391
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:184 → 204
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:393 → 415
      zf-H2C2_2; Zinc-finger double domain

    7. XM_008766011.4 → XP_008764233.1  zinc finger protein OZF isoform X1

      Conserved Domains (4) summary
      smart00349
      Location:4 → 59
      KRAB; krueppel associated box
      COG5048
      Location:194 → 391
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:184 → 204
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:393 → 415
      zf-H2C2_2; Zinc-finger double domain

    8. XM_063266371.1 → XP_063122441.1  zinc finger protein OZF isoform X1

      Related
      ENSRNOP00000019204.6, ENSRNOT00000019204.7

    9. XM_063266370.1 → XP_063122440.1  zinc finger protein OZF isoform X1

    10. XM_008766017.4 → XP_008764239.1  zinc finger protein OZF isoform X1

      Conserved Domains (4) summary
      smart00349
      Location:4 → 59
      KRAB; krueppel associated box
      COG5048
      Location:194 → 391
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:184 → 204
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:393 → 415
      zf-H2C2_2; Zinc-finger double domain

    11. XM_039082266.2 → XP_038938194.1  zinc finger protein OZF isoform X1

      Conserved Domains (4) summary
      smart00349
      Location:4 → 59
      KRAB; krueppel associated box
      COG5048
      Location:194 → 391
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:184 → 204
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:393 → 415
      zf-H2C2_2; Zinc-finger double domain

    12. XM_039082265.2 → XP_038938193.1  zinc finger protein OZF isoform X1

      UniProtKB/TrEMBL
      A6JNZ8, F1M829
      Conserved Domains (4) summary
      smart00349
      Location:4 → 59
      KRAB; krueppel associated box
      COG5048
      Location:194 → 391
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:184 → 204
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:393 → 415
      zf-H2C2_2; Zinc-finger double domain

    13. XM_063266372.1 → XP_063122442.1  zinc finger protein OZF isoform X1

    RNA

    1. XR_005487989.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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