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    Golt1a golgi transport 1A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498230, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Golt1aprovided by RGD
    Official Full Name
    golgi transport 1Aprovided by RGD
    Primary source
    RGD:1566310
    See related
    EnsemblRapid:ENSRNOG00000002936 AllianceGenome:RGD:1566310
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1566310
    Summary
    Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport and retrograde transport, endosome to Golgi. Predicted to be located in Golgi cis cisterna; nuclear envelope; and trans-Golgi network. Predicted to be active in endoplasmic reticulum and membrane. Orthologous to human GOLT1A (golgi transport 1A). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Liver (RPKM 90.5) and Kidney (RPKM 41.1) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Golt1a in Genome Data Viewer
    Location:
    13q13
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (47312412..47325176)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (44760356..44773123)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (50532116..50550029, complement)

    Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1, regulatory subunit 15B Neighboring gene pleckstrin homology domain containing A6 Neighboring gene KiSS-1 metastasis-suppressor Neighboring gene uncharacterized LOC102550525 Neighboring gene renin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Got1p and Sft2p: membrane proteins involved in traffic to the Golgi complex. Conchon S, et al. EMBO J, 1999 Jul 15. PMID 10406798, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in retrograde transport, endosome to Golgi IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi cis cisterna ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in endoplasmic reticulum IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nuclear envelope ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in trans-Golgi network ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    vesicle transport protein GOT1A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109070.1 → NP_001102540.1  vesicle transport protein GOT1A

      See identical proteins and their annotated locations for NP_001102540.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473958
      UniProtKB/TrEMBL
      A6IC72, D3ZFB0
      Related
      ENSRNOP00000003918.5, ENSRNOT00000003918.7
      Conserved Domains (1) summary
      cl02130
      Location:4 → 109
      Got1; Got1/Sft2-like family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086031.1 Reference GRCr8

      Range
      47312412..47325176
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017598877.2 → XP_017454366.1  vesicle transport protein GOT1A isoform X1

      UniProtKB/TrEMBL
      A6IC72, D3ZFB0
      Conserved Domains (1) summary
      cl02130
      Location:4 → 109
      Got1; Got1/Sft2-like family
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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