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    Poteh POTE ankyrin domain family member H [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100363368, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Potehprovided by RGD
    Official Full Name
    POTE ankyrin domain family member Hprovided by RGD
    Primary source
    RGD:2323175
    See related
    AllianceGenome:RGD:2323175
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human POTEH (POTE ankyrin domain family member H). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 26.3), Lung (RPKM 13.8) and 9 other tissues See more
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    Genomic context

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    See Poteh in Genome Data Viewer
    Location:
    15p14
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 15 NC_086033.1 (19559450..19654345)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 15 NC_051350.1 (17131582..17219924)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (18919299..19008178)

    Chromosome 15 - NC_086033.1Genomic Context describing neighboring genes Neighboring gene filamin B Neighboring gene uncharacterized LOC134482086 Neighboring gene ribosomal protein S19, pseudogene 15 Neighboring gene UTP4 small subunit processome component, pseudogene 1 Neighboring gene replication factor C subunit 5, pseudogene 2 Neighboring gene ubiquitin-conjugating enzyme E2G 1 like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    ankyrin repeat domain-containing protein 26-like; coiled-coil domain-containing protein 144A-like
    Names
    mCG11429-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086033.1 Reference GRCr8

      Range
      19559450..19654345
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008770604.4 → XP_008768826.1  ankyrin repeat domain-containing protein 26-like isoform X2

      See identical proteins and their annotated locations for XP_008768826.1

      Conserved Domains (6) summary
      cd00204
      Location:49 → 174
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12001
      Location:939 → 1038
      DUF3496; Domain of unknown function (DUF3496)
      pfam12796
      Location:59 → 150
      Ank_2; Ankyrin repeats (3 copies)
      pfam13637
      Location:25 → 75
      Ank_4; Ankyrin repeats (many copies)
      pfam13857
      Location:140 → 179
      Ank_5; Ankyrin repeats (many copies)
      sd00045
      Location:54 → 85
      ANK; ANK repeat [structural motif]

    2. XM_006251787.5 → XP_006251849.1  ankyrin repeat domain-containing protein 26-like isoform X1

      See identical proteins and their annotated locations for XP_006251849.1

      Conserved Domains (6) summary
      cd00204
      Location:49 → 174
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12001
      Location:939 → 1038
      DUF3496; Domain of unknown function (DUF3496)
      pfam12796
      Location:59 → 150
      Ank_2; Ankyrin repeats (3 copies)
      pfam13637
      Location:25 → 75
      Ank_4; Ankyrin repeats (many copies)
      pfam13857
      Location:140 → 179
      Ank_5; Ankyrin repeats (many copies)
      sd00045
      Location:54 → 85
      ANK; ANK repeat [structural motif]

    3. XM_008770605.4 → XP_008768827.1  ankyrin repeat domain-containing protein 26-like isoform X4

      See identical proteins and their annotated locations for XP_008768827.1

      Conserved Domains (6) summary
      cd00204
      Location:49 → 174
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12001
      Location:875 → 974
      DUF3496; Domain of unknown function (DUF3496)
      pfam12796
      Location:59 → 150
      Ank_2; Ankyrin repeats (3 copies)
      pfam13637
      Location:25 → 75
      Ank_4; Ankyrin repeats (many copies)
      pfam13857
      Location:140 → 179
      Ank_5; Ankyrin repeats (many copies)
      sd00045
      Location:54 → 85
      ANK; ANK repeat [structural motif]

    4. XM_039093754.2 → XP_038949682.1  ankyrin repeat domain-containing protein 26-like isoform X3

      Conserved Domains (4) summary
      COG1196
      Location:706 → 964
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      sd00045
      Location:54 → 85
      ANK; ANK repeat [structural motif]
      pfam12001
      Location:885 → 984
      DUF3496; Domain of unknown function (DUF3496)
      pfam12796
      Location:25 → 118
      Ank_2; Ankyrin repeats (3 copies)

    5. XM_063274849.1 → XP_063130919.1  coiled-coil domain-containing protein 144A-like isoform X5

    6. XM_063274848.1 → XP_063130918.1  coiled-coil domain-containing protein 144A-like isoform X5

    7. XM_063274850.1 → XP_063130920.1  ankyrin repeat domain-containing protein 26-like isoform X6

    RNA

    1. XR_010058107.1 RNA Sequence

    2. XR_010058106.1 RNA Sequence

    3. XR_010058108.1 RNA Sequence

    4. XR_010058105.1 RNA Sequence

    5. XR_005493877.2 RNA Sequence

    6. XR_001841483.3 RNA Sequence

    7. XR_005493880.2 RNA Sequence

    8. XR_005493879.2 RNA Sequence

    9. XR_005493882.2 RNA Sequence

    10. XR_005493884.2 RNA Sequence

    11. XR_005493886.2 RNA Sequence

    12. XR_005493881.2 RNA Sequence

    13. XR_005493883.2 RNA Sequence

    14. XR_005493885.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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