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    Ccdc71 coiled-coil domain containing 71 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498678, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Ccdc71provided by RGD
    Official Full Name
    coiled-coil domain containing 71provided by RGD
    Primary source
    RGD:1566341
    See related
    EnsemblRapid:ENSRNOG00000048718 AllianceGenome:RGD:1566341
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human CCDC71 (coiled-coil domain containing 71). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Adrenal (RPKM 42.9), Spleen (RPKM 42.9) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ccdc71 in Genome Data Viewer
    Location:
    8q32
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (118025192..118040143)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (109146650..109161749)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (117236933..117251573)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene interactor of HORMAD1 1 Neighboring gene ciliary microtubule inner protein 7 Neighboring gene kelch domain containing 8B Neighboring gene laminin subunit beta 2 Neighboring gene ubiquitin specific peptidase 19

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Distinctive genes determine different intramuscular fat and muscle fiber ratios of the longissimus dorsi muscles in Jinhua and landrace pigs. Wu T, et al. PLoS One, 2013. PMID 23301040, Free PMC Article
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC116171

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 71

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024904.1 → NP_001020075.1  coiled-coil domain-containing protein 71

      See identical proteins and their annotated locations for NP_001020075.1

      Status: PROVISIONAL

      Source sequence(s)
      BC098020
      UniProtKB/Swiss-Prot
      Q4V7C4
      UniProtKB/TrEMBL
      A6I358
      Related
      ENSRNOP00000108532.1, ENSRNOT00000150571.1
      Conserved Domains (1) summary
      pfam15374
      Location:8 → 433
      CCDC71L; Coiled-coil domain-containing protein 71L

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      118025192..118040143
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006243832.4 → XP_006243894.1  coiled-coil domain-containing protein 71 isoform X1

      UniProtKB/TrEMBL
      A0A8L2QWS1
      Conserved Domains (1) summary
      pfam15374
      Location:38 → 463
      CCDC71L; Coiled-coil domain-containing protein 71L

    2. XM_039081903.2 → XP_038937831.1  coiled-coil domain-containing protein 71 isoform X2

      UniProtKB/Swiss-Prot
      Q4V7C4
      UniProtKB/TrEMBL
      A6I358
      Related
      ENSRNOP00000097250.1, ENSRNOT00000100156.2
      Conserved Domains (1) summary
      pfam15374
      Location:8 → 433
      CCDC71L; Coiled-coil domain-containing protein 71L
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q4V7C4.1 GenPept UniProtKB/Swiss-Prot:Q4V7C4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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