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    Zmat5 zinc finger, matrin type 5 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 501926, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Zmat5provided by RGD
    Official Full Name
    zinc finger, matrin type 5provided by RGD
    Primary source
    RGD:1559774
    See related
    EnsemblRapid:ENSRNOG00000007849 AllianceGenome:RGD:1559774
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1559774
    Summary
    Predicted to enable zinc ion binding activity. Predicted to be located in nucleoplasm. Predicted to be part of U12-type spliceosomal complex. Orthologous to human ZMAT5 (zinc finger matrin-type 5). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Adrenal (RPKM 40.0), Brain (RPKM 24.4) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Zmat5 in Genome Data Viewer
    Location:
    14q21
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (83791005..83823095)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (79568644..79599595)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (84937843..84968898)

    Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene activating signal cointegrator 1 complex subunit 2 Neighboring gene transfer RNA threonine (anticodon AGU) 19 Neighboring gene ubiquinol-cytochrome c reductase, complex III subunit X Neighboring gene calcium binding protein 7 Neighboring gene NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor Neighboring gene nipsnap homolog 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. The human 18S U11/U12 snRNP contains a set of novel proteins not found in the U2-dependent spliceosome. Will CL, et al. RNA, 2004 Jun. PMID 15146077, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of U12-type spliceosomal complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of U12-type spliceosomal complex ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger matrin-type protein 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001399058.1 → NP_001385987.1  zinc finger matrin-type protein 5

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000014
      UniProtKB/TrEMBL
      D3ZLD2
      Related
      ENSRNOP00000103908.1, ENSRNOT00000173626.1
      Conserved Domains (2) summary
      COG5152
      Location:3 → 107
      COG5152; Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
      pfam00642
      Location:55 → 76
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086032.1 Reference GRCr8

      Range
      83791005..83823095
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063273510.1 → XP_063129580.1  zinc finger matrin-type protein 5 isoform X2

      UniProtKB/TrEMBL
      D3ZLD2

    2. XM_063273506.1 → XP_063129576.1  zinc finger matrin-type protein 5 isoform X1

      Related
      ENSRNOP00000010332.5, ENSRNOT00000010332.8

    3. XM_063273511.1 → XP_063129581.1  zinc finger matrin-type protein 5 isoform X3

    4. XM_063273508.1 → XP_063129578.1  zinc finger matrin-type protein 5 isoform X1

    5. XM_039092843.2 → XP_038948771.1  zinc finger matrin-type protein 5 isoform X2

      UniProtKB/TrEMBL
      D3ZLD2
      Conserved Domains (2) summary
      COG5152
      Location:3 → 107
      COG5152; Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
      pfam00642
      Location:55 → 76
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

    6. XM_063273507.1 → XP_063129577.1  zinc finger matrin-type protein 5 isoform X1

    7. XM_039092842.2 → XP_038948770.1  zinc finger matrin-type protein 5 isoform X2

      UniProtKB/TrEMBL
      D3ZLD2
      Conserved Domains (2) summary
      COG5152
      Location:3 → 107
      COG5152; Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
      pfam00642
      Location:55 → 76
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)

    8. XM_063273509.1 → XP_063129579.1  zinc finger matrin-type protein 5 isoform X1

    9. XM_006251427.5 → XP_006251489.1  zinc finger matrin-type protein 5 isoform X2

      See identical proteins and their annotated locations for XP_006251489.1

      UniProtKB/TrEMBL
      D3ZLD2
      Conserved Domains (2) summary
      COG5152
      Location:3 → 107
      COG5152; Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
      pfam00642
      Location:55 → 76
      zf-CCCH; Zinc finger C-x8-C-x5-C-x3-H type (and similar)
    Nucleotide Protein Strain
    Heading Accession and Version

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