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    Lysmd4 LysM domain containing 4 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 681647, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Lysmd4provided by RGD
    Official Full Name
    LysM domain containing 4provided by RGD
    Primary source
    RGD:1592887
    See related
    EnsemblRapid:ENSRNOG00000050624 AllianceGenome:RGD:1592887
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in membrane. Orthologous to human LYSMD4 (LysM domain containing 4). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Heart (RPKM 97.4), Muscle (RPKM 40.2) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Lysmd4 in Genome Data Viewer
    Location:
    1q22
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (130249340..130255357)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (120839180..120845148)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (128199100..128204989)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134483668 Neighboring gene uncharacterized LOC134483669 Neighboring gene myocyte enhancer factor 2a Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    lysM and putative peptidoglycan-binding domain-containing protein 4
    Names
    LysM, putative peptidoglycan-binding, domain containing 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401374.1 → NP_001388303.1  lysM and putative peptidoglycan-binding domain-containing protein 4 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A6JBR7, M0R4W5

    2. NM_001401375.1 → NP_001388304.1  lysM and putative peptidoglycan-binding domain-containing protein 4 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A6JBR7, M0R4W5
      Related
      ENSRNOP00000064415.3, ENSRNOT00000075131.4

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      130249340..130255357
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017590159.3 → XP_017445648.1  lysM and putative peptidoglycan-binding domain-containing protein 4 isoform X2

      UniProtKB/TrEMBL
      A6JBR7

    2. XM_063273774.1 → XP_063129844.1  lysM and putative peptidoglycan-binding domain-containing protein 4 isoform X3

    3. XM_063273778.1 → XP_063129848.1  lysM and putative peptidoglycan-binding domain-containing protein 4 isoform X5

      UniProtKB/TrEMBL
      A0A8I6AY74

    4. XM_039094384.2 → XP_038950312.1  lysM and putative peptidoglycan-binding domain-containing protein 4 isoform X4

      UniProtKB/TrEMBL
      A0A8I6AY74, A6JBR5

    5. XM_039094371.2 → XP_038950299.1  lysM and putative peptidoglycan-binding domain-containing protein 4 isoform X1

      UniProtKB/TrEMBL
      A6JBR7
      Related
      ENSRNOP00000094030.2, ENSRNOT00000107467.2
      Conserved Domains (1) summary
      smart00257
      Location:94 → 132
      LysM; Lysin motif

    6. XM_039094387.2 → XP_038950315.1  lysM and putative peptidoglycan-binding domain-containing protein 4 isoform X4

      UniProtKB/TrEMBL
      A0A8I6AY74, A6JBR5
      Related
      ENSRNOP00000099116.1, ENSRNOT00000170390.1
    Nucleotide Protein Strain
    Heading Accession and Version

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