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    Rtl6 retrotransposon Gag like 6 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 300114, updated on 9-Dec-2024

    Summary

    Symbol
    Rtl6provided by RGD
    Full Name
    retrotransposon Gag like 6provided by RGD
    Primary source
    RGD:1306472
    See related
    EnsemblRapid:ENSRNOG00000064516 AllianceGenome:RGD:1306472
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Ldoc1l; RGD1306472
    Summary
    Orthologous to human RTL6 (retrotransposon Gag like 6). [provided by Alliance of Genome Resources, Dec 2024]
    Orthologs
    NEW
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    Genomic context

    See Rtl6 in Genome Data Viewer
    Location:
    7q34
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (117564780..117569865, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (115684812..115689897, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (125461410..125466522, complement)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene parvin, gamma Neighboring gene shisa like 1 Neighboring gene U6 spliceosomal RNA Neighboring gene basic transcription factor 3 like 6

    Genomic regions, transcripts, and products

    General protein information

    Preferred Names
    retrotransposon Gag-like protein 6
    Names
    breast cancer, up-regulated 1
    leucine zipper, down-regulated in cancer 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001399726.1NP_001386655.1  retrotransposon Gag-like protein 6

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000007
      UniProtKB/TrEMBL
      A0A8I6G8M7
      Related
      ENSRNOP00000081919.1, ENSRNOT00000097662.2

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      117564780..117569865 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)