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    Cracdl CRACD like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 301351, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Cracdlprovided by RGD
    Official Full Name
    CRACD likeprovided by RGD
    Primary source
    RGD:1310819
    See related
    EnsemblRapid:ENSRNOG00000018366 AllianceGenome:RGD:1310819
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1310819
    Summary
    Orthologous to human CRACDL (CRACD like). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 81.0), Lung (RPKM 42.5) and 3 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Cracdl in Genome Data Viewer
    Location:
    9q21
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (47323785..47446612, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (39834321..39950763, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (44194348..44309816, complement)

    Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120094669 Neighboring gene cytochrome C oxidase assembly factor 5 Neighboring gene unc-50 inner nuclear membrane RNA binding protein Neighboring gene alpha-1,3-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase A Neighboring gene uncharacterized LOC134480567 Neighboring gene U2 spliceosomal RNA Neighboring gene testis specific 10 Neighboring gene chromosome 9 C2orf15 homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    CRACD like; CRACD-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001428724.1 → NP_001415653.1  CRACD like isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009
      UniProtKB/TrEMBL
      A0A8I6ARE4, D3ZBU7

    2. NM_001428725.1 → NP_001415654.1  CRACD like isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009
      UniProtKB/TrEMBL
      A0A8I6ARE4, D3ZBU7

    3. NM_001428726.1 → NP_001415655.1  CRACD like isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009
      UniProtKB/TrEMBL
      D3ZBU7

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086027.1 Reference GRCr8

      Range
      47323785..47446612 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063268117.1 → XP_063124187.1  CRACD-like protein isoform X6

    2. XM_008767055.4 → XP_008765277.2  CRACD-like protein isoform X5

      Conserved Domains (1) summary
      pfam15262
      Location:144 → 242
      DUF4592; Domain of unknown function (DUF4592)

    3. XM_039084538.2 → XP_038940466.1  CRACD-like protein isoform X3

      Related
      ENSRNOP00000097364.2, ENSRNOT00000102615.2
      Conserved Domains (3) summary
      PTZ00436
      Location:467 → 601
      PTZ00436; 60S ribosomal protein L19-like protein; Provisional
      PHA03247
      Location:523 → 1040
      PHA03247; large tegument protein UL36; Provisional
      pfam15262
      Location:166 → 264
      DUF4592; Domain of unknown function (DUF4592)

    4. XM_006244861.5 → XP_006244923.2  CRACD-like protein isoform X2

      Conserved Domains (1) summary
      pfam15262
      Location:172 → 270
      DUF4592; Domain of unknown function (DUF4592)

    5. XM_006244862.5 → XP_006244924.1  CRACD-like protein isoform X1

      Related
      ENSRNOP00000097029.1, ENSRNOT00000118166.2
      Conserved Domains (1) summary
      pfam15262
      Location:172 → 270
      DUF4592; Domain of unknown function (DUF4592)

    6. XM_006244864.5 → XP_006244926.1  CRACD-like protein isoform X4

      Related
      ENSRNOP00000062387.4, ENSRNOT00000068496.6
      Conserved Domains (1) summary
      pfam15262
      Location:164 → 262
      DUF4592; Domain of unknown function (DUF4592)
    Nucleotide Protein Strain
    Heading Accession and Version

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