U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Cysrt1 cysteine rich tail 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 499747, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Cysrt1provided by RGD
    Official Full Name
    cysteine rich tail 1provided by RGD
    Primary source
    RGD:1560880
    See related
    EnsemblRapid:ENSRNOG00000010600 AllianceGenome:RGD:1560880
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1560880
    Summary
    Predicted to enable identical protein binding activity. Predicted to be involved in biological process involved in interaction with symbiont and establishment of skin barrier. Predicted to be located in cornified envelope. Orthologous to human CYSRT1 (cysteine rich tail 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 26.5), Kidney (RPKM 15.7) and 6 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Cysrt1 in Genome Data Viewer
    Location:
    3p13
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (28452359..28456006, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (8054195..8057846, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (2458295..2462037, complement)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120101506 Neighboring gene solute carrier family 34 member 3 Neighboring gene ring finger protein 224 Neighboring gene ring finger protein 208 Neighboring gene RING finger protein 208 Neighboring gene NADPH dependent diflavin oxidoreductase 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Large-scale proteomics and phosphoproteomics of urinary exosomes. Gonzales PA, et al. J Am Soc Nephrol, 2009 Feb. PMID 19056867, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables identical protein binding ISO
    Inferred from Sequence Orthology
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological process involved in interaction with symbiont ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in establishment of skin barrier ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    located_in cornified envelope ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    cysteine-rich tail protein 1
    Names
    UPF0574 protein C9orf169 homolog

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109194.1 → NP_001102664.1  cysteine-rich tail protein 1

      See identical proteins and their annotated locations for NP_001102664.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474001
      UniProtKB/TrEMBL
      A0A8I6GI68, A6JT21, D4ADR7
      Conserved Domains (1) summary
      pfam10631
      Location:1 → 138
      DUF2477; Protein of unknown function (DUF2477)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      28452359..28456006 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017591974.3 → XP_017447463.1  cysteine-rich tail protein 1 isoform X1

    2. XM_063284339.1 → XP_063140409.1  cysteine-rich tail protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8I6GI68, A6JT21, D4ADR7

    3. XM_039105653.2 → XP_038961581.1  cysteine-rich tail protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8I6GI68, A6JT21, D4ADR7
      Related
      ENSRNOP00000090431.1, ENSRNOT00000107278.2
      Conserved Domains (1) summary
      pfam10631
      Location:1 → 138
      DUF2477; Protein of unknown function (DUF2477)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools