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    Swt1 SWT1 RNA endoribonuclease homolog [ Rattus norvegicus (Norway rat) ]

    Gene ID: 289088, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Swt1provided by RGD
    Official Full Name
    SWT1 RNA endoribonuclease homologprovided by RGD
    Primary source
    RGD:1308695
    See related
    EnsemblRapid:ENSRNOG00000032258 AllianceGenome:RGD:1308695
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1308695
    Summary
    Predicted to be located in membrane. Predicted to be active in nucleus. Orthologous to human SWT1 (SWT1 RNA endoribonuclease homolog). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 140.5), Kidney (RPKM 97.7) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Swt1 in Genome Data Viewer
    Location:
    13q21
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (66002477..66059962, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (63452494..63509982, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (68728266..68785800, complement)

    Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134481568 Neighboring gene influenza virus NS1A binding protein Neighboring gene tRNA methyltransferase 1-like Neighboring gene ring finger protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    transcriptional protein SWT1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001105960.1 → NP_001099430.1  transcriptional protein SWT1

      See identical proteins and their annotated locations for NP_001099430.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473958
      UniProtKB/TrEMBL
      A0A0G2K2J8, A6ICS4, D3ZHR0
      Related
      ENSRNOP00000049813.3, ENSRNOT00000044255.6
      Conserved Domains (1) summary
      cd09880
      Location:400 → 544
      PIN_Smg5-Smg6-like; PIN domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086031.1 Reference GRCr8

      Range
      66002477..66059962 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039090452.2 → XP_038946380.1  transcriptional protein SWT1 isoform X2

      Conserved Domains (1) summary
      cd18727
      Location:58 → 197
      PIN_Swt1-like; VapC-like PIN domain of Saccharomyces cerevisiae Swt1p, human SWT1 and related proteins

    2. XM_017598703.3 → XP_017454192.1  transcriptional protein SWT1 isoform X1

      UniProtKB/TrEMBL
      A0A0G2K2J8
      Related
      ENSRNOP00000102386.1, ENSRNOT00000171113.1

    3. XM_063272100.1 → XP_063128170.1  transcriptional protein SWT1 isoform X3

    RNA

    1. XR_005492213.2 RNA Sequence

    2. XR_005492214.2 RNA Sequence

    3. XR_010056907.1 RNA Sequence

    4. XR_005492215.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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