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    Zbtb41 zinc finger and BTB domain containing 41 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 289052, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Zbtb41provided by RGD
    Official Full Name
    zinc finger and BTB domain containing 41provided by RGD
    Primary source
    RGD:1560834
    See related
    EnsemblRapid:ENSRNOG00000081235 AllianceGenome:RGD:1560834
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to human ZBTB41 (zinc finger and BTB domain containing 41). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 123.2), Brain (RPKM 103.1) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Zbtb41 in Genome Data Viewer
    Location:
    13q13
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (53591961..53622007)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (51042948..51065768)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (56513231..56542444)

    Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene crumbs cell polarity complex component 1 Neighboring gene assembly factor for spindle microtubules Neighboring gene U4 spliceosomal RNA Neighboring gene coagulation factor XIII B chain

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    zinc finger and BTB domain-containing protein 41
    Names
    zinc finger and BTB domain containing 41 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191670.2 → NP_001178599.1  zinc finger and BTB domain-containing protein 41

      See identical proteins and their annotated locations for NP_001178599.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000013
      UniProtKB/TrEMBL
      A6ICM4
      Conserved Domains (5) summary
      smart00225
      Location:90 → 174
      BTB; Broad-Complex, Tramtrack and Bric a brac
      sd00017
      Location:576 → 596
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:602 → 624
      zf-C2H2; Zinc finger, C2H2 type
      pfam00651
      Location:78 → 174
      BTB; BTB/POZ domain
      pfam13465
      Location:681 → 704
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086031.1 Reference GRCr8

      Range
      53591961..53622007
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063272091.1 → XP_063128161.1  zinc finger and BTB domain-containing protein 41 isoform X1

      Related
      ENSRNOP00000109720.1, ENSRNOT00000161395.1

    2. XM_063272092.1 → XP_063128162.1  zinc finger and BTB domain-containing protein 41 isoform X1

      UniProtKB/TrEMBL
      A6ICM4

    3. XM_063272093.1 → XP_063128163.1  zinc finger and BTB domain-containing protein 41 isoform X1

      UniProtKB/TrEMBL
      A6ICM4

    4. XM_063272094.1 → XP_063128164.1  zinc finger and BTB domain-containing protein 41 isoform X1

      UniProtKB/TrEMBL
      A6ICM4
    Nucleotide Protein Strain
    Heading Accession and Version

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