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    Obp2b odorant binding protein 2B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 286933, updated on 27-Dec-2024

    Summary

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    Official Symbol
    Obp2bprovided by RGD
    Official Full Name
    odorant binding protein 2Bprovided by RGD
    Primary source
    RGD:708374
    See related
    EnsemblRapid:ENSRNOG00000048417 AllianceGenome:RGD:708374
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Obp2a; Obp2aa; Ry2g12
    Summary
    Predicted to enable small molecule binding activity. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Orthologous to human OBP2B (odorant binding protein 2B). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Uterus (RPKM 2.2), Testes (RPKM 1.5) and 1 other tissue See more
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    Genomic context

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    See Obp2b in Genome Data Viewer
    Location:
    3p13
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (28960375..28983394)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (8582074..8585258)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (2969692..3002956)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene progestagen associated endometrial protein like 1 Neighboring gene progestagen associated endometrial protein Neighboring gene lipocalin 3 Neighboring gene von Ebner gland protein 1-like Neighboring gene odorant binding protein 2B like 1 Neighboring gene parkin RBR E3 ubiquitin protein ligase like 1 Neighboring gene eukaryotic translation initiation factor 4E, pseudogene 4 Neighboring gene lipocalin-15 like 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Molecular cloning of putative odorant-binding and odorant-metabolizing proteins. Dear TN, et al. Biochemistry, 1991 Oct 29. PMID 1931961
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables small molecule binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in extracellular space IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    odorant-binding protein 2a
    Names
    odorant binding protein 2A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_173148.2 → NP_775171.2  odorant-binding protein 2a precursor

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/TrEMBL
      A6MGQ9, M0RDH1, Q63613
      Related
      ENSRNOP00000067672.3, ENSRNOT00000071907.4
      Conserved Domains (1) summary
      cd19414
      Location:26 → 172
      lipocalin_1_3_4_13-like; lipocalin-1, -3, -4, -13 and similar proteins

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      28960375..28983394
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063283195.1 → XP_063139265.1  odorant-binding protein 2a isoform X5

    2. XM_063283196.1 → XP_063139266.1  odorant-binding protein 2a isoform X5

    3. XM_063283192.1 → XP_063139262.1  odorant-binding protein 2a isoform X5

    4. XM_063283191.1 → XP_063139261.1  odorant-binding protein 2a isoform X5

    5. XM_063283193.1 → XP_063139263.1  odorant-binding protein 2a isoform X5

    6. XM_063283194.1 → XP_063139264.1  odorant-binding protein 2a isoform X5

    7. XM_063283190.1 → XP_063139260.1  odorant-binding protein 2a isoform X4

      UniProtKB/TrEMBL
      Q63613

    8. XM_063283189.1 → XP_063139259.1  odorant-binding protein 2a isoform X3

      UniProtKB/TrEMBL
      A6MGQ9, M0RDH1, Q63613

    9. XM_063283188.1 → XP_063139258.1  odorant-binding protein 2a isoform X3

      UniProtKB/TrEMBL
      A6MGQ9, M0RDH1, Q63613

    10. XM_063283187.1 → XP_063139257.1  odorant-binding protein 2a isoform X3

      UniProtKB/TrEMBL
      A6MGQ9, M0RDH1, Q63613

    11. XM_063283186.1 → XP_063139256.1  odorant-binding protein 2a isoform X2

    12. XM_063283185.1 → XP_063139255.1  odorant-binding protein 2a isoform X1

    13. XM_063283184.1 → XP_063139254.1  odorant-binding protein 2a isoform X1

    14. XM_063283182.1 → XP_063139252.1  odorant-binding protein 2a isoform X1

    15. XM_063283183.1 → XP_063139253.1  odorant-binding protein 2a isoform X1

    RNA

    1. XR_010064574.1 RNA Sequence

    2. XR_010064573.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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