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    Vat1l vesicle amine transport 1-like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 361414, updated on 4-Jan-2025

    Summary

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    Official Symbol
    Vat1lprovided by RGD
    Official Full Name
    vesicle amine transport 1-likeprovided by RGD
    Primary source
    RGD:1598315
    See related
    EnsemblRapid:ENSRNOG00000011989 AllianceGenome:RGD:1598315
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable oxidoreductase activity and zinc ion binding activity. Orthologous to human VAT1L (vesicle amine transport 1 like). [provided by Alliance of Genome Resources, Jan 2025]
    Expression
    Biased expression in Brain (RPKM 269.7), Adrenal (RPKM 31.5) and 1 other tissue See more
    Orthologs
    human mouse all
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    Genomic context

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    See Vat1l in Genome Data Viewer
    Location:
    19q12
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (59103636..59272950)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (42194511..42363835)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (46525895..46693838)

    Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene ADAM metallopeptidase with thrombospondin type 1 motif, 18 Neighboring gene S-phase kinase-associated protein 1, pseudogene 2 Neighboring gene nudix hydrolase 7 Neighboring gene uncharacterized LOC120098537 Neighboring gene C-type lectin domain family 3, member A Neighboring gene WW domain-containing oxidoreductase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    synaptic vesicle membrane protein VAT-1 homolog-like
    Names
    vesicle amine transport protein 1 homolog (T. californica)-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001400980.1 → NP_001387909.1  synaptic vesicle membrane protein VAT-1 homolog-like

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000019
      UniProtKB/TrEMBL
      A6IZE1, M0R3N4
      Related
      ENSRNOP00000063952.3, ENSRNOT00000075628.6

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086037.1 Reference GRCr8

      Range
      59103636..59272950
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039098305.2 → XP_038954233.1  synaptic vesicle membrane protein VAT-1 homolog-like isoform X1

      UniProtKB/TrEMBL
      A6IZE1
      Conserved Domains (1) summary
      cd08275
      Location:1 → 295
      MDR3; Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

    2. XM_039098306.2 → XP_038954234.1  synaptic vesicle membrane protein VAT-1 homolog-like isoform X1

      UniProtKB/TrEMBL
      A6IZE1
      Conserved Domains (1) summary
      cd08275
      Location:1 → 295
      MDR3; Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family
    Nucleotide Protein Strain
    Heading Accession and Version

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