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    Mrpl54 mitochondrial ribosomal protein L54 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 299628, updated on 9-Dec-2024

    Summary

    Official Symbol
    Mrpl54provided by RGD
    Official Full Name
    mitochondrial ribosomal protein L54provided by RGD
    Primary source
    RGD:1305694
    See related
    EnsemblRapid:ENSRNOG00000020464 AllianceGenome:RGD:1305694
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be a structural constituent of ribosome. Predicted to be located in mitochondrion. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL54 (mitochondrial ribosomal protein L54). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Muscle (RPKM 552.5), Heart (RPKM 440.5) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Mrpl54 in Genome Data Viewer
    Location:
    7q11
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (9103525..9106045)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (8452801..8455321)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (11321057..11323577)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol-4-phosphate 5-kinase type 1 gamma Neighboring gene tight junction protein 3 Neighboring gene amyloid beta precursor protein binding family A member 3 Neighboring gene megakaryocyte-associated tyrosine kinase Neighboring gene zinc finger RNA binding protein 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    part_of mitochondrial large ribosomal subunit  
    part_of mitochondrial large ribosomal subunit  
    located_in mitochondrion  

    General protein information

    Preferred Names
    large ribosomal subunit protein mL54
    Names
    39S ribosomal protein L54, mitochondrial

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106770.1NP_001100240.1  large ribosomal subunit protein mL54

      See identical proteins and their annotated locations for NP_001100240.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474029
      UniProtKB/TrEMBL
      A6K8A2
      Related
      ENSRNOP00000027737.6, ENSRNOT00000027737.7
      Conserved Domains (1) summary
      pfam08561
      Location:67130
      Ribosomal_L37; Mitochondrial ribosomal protein L37

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      9103525..9106045
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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