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    Zfp286a zinc finger protein 286A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 497923, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Zfp286aprovided by RGD
    Official Full Name
    zinc finger protein 286Aprovided by RGD
    Primary source
    RGD:1561950
    See related
    EnsemblRapid:ENSRNOG00000003218 AllianceGenome:RGD:1561950
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Zfp286; Znf286a; RGD1561950
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Orthologous to several human genes including ZNF286A (zinc finger protein 286A). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 40.1), Brain (RPKM 28.2) and 8 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Zfp286a in Genome Data Viewer
    Location:
    10q23
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (47949698..47960496, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (47450469..47461267, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (49185906..49196765, complement)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene small nucleolar RNA SNORA67 Neighboring gene tripartite motif-containing 16 Neighboring gene F-box and WD repeat domain containing 10 Neighboring gene U4 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 286A
    Names
    zinc finger protein 286

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191921.1 → NP_001178850.1  zinc finger protein 286A

      See identical proteins and their annotated locations for NP_001178850.1

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000010
      UniProtKB/TrEMBL
      A0A0G2K5Q4, A6HFC1, D4A514
      Related
      ENSRNOP00000004294.6, ENSRNOT00000004294.8
      Conserved Domains (6) summary
      smart00349
      Location:50 → 94
      KRAB; krueppel associated box
      COG5048
      Location:351 → 506
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:383 → 403
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:353 → 375
      zf-C2H2; Zinc finger, C2H2 type
      pfam01352
      Location:50 → 85
      KRAB; KRAB box
      pfam13465
      Location:423 → 448
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      47949698..47960496 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039086570.2 → XP_038942498.1  zinc finger protein 286A isoform X1

      Conserved Domains (3) summary
      smart00349
      Location:44 → 88
      KRAB; krueppel associated box
      COG5048
      Location:345 → 500
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:377 → 397
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. XM_017597449.3 → XP_017452938.1  zinc finger protein 286A isoform X2

      UniProtKB/TrEMBL
      D4A514
      Conserved Domains (3) summary
      smart00349
      Location:1 → 52
      KRAB; krueppel associated box
      COG5048
      Location:295 → 450
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:327 → 347
      ZF_C2H2; C2H2 Zn finger [structural motif]

    3. XM_039086571.2 → XP_038942499.1  zinc finger protein 286A isoform X2

      Conserved Domains (3) summary
      smart00349
      Location:1 → 52
      KRAB; krueppel associated box
      COG5048
      Location:295 → 450
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:327 → 347
      ZF_C2H2; C2H2 Zn finger [structural motif]

    4. XM_017597450.3 → XP_017452939.1  zinc finger protein 286A isoform X2

      UniProtKB/TrEMBL
      D4A514
      Conserved Domains (3) summary
      smart00349
      Location:1 → 52
      KRAB; krueppel associated box
      COG5048
      Location:295 → 450
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:327 → 347
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version

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