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    C17h6orf52 similar to human chromosome 6 open reading frame 52 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498729, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C17h6orf52provided by RGD
    Official Full Name
    similar to human chromosome 6 open reading frame 52provided by RGD
    Primary source
    RGD:1562963
    See related
    EnsemblRapid:ENSRNOG00000039379 AllianceGenome:RGD:1562963
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1562963
    Summary
    Predicted to enable tRNA binding activity. Predicted to be involved in selenocysteine incorporation. Predicted to be active in nucleus. Orthologous to human C6orf52 (chromosome 6 open reading frame 52). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 6.3), Liver (RPKM 5.9) and 9 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See C17h6orf52 in Genome Data Viewer
    Location:
    17p12
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 17 NC_086035.1 (23959124..23981978)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (23753359..23776251)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (21600326..21615888)

    Chromosome 17 - NC_086035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134482840 Neighboring gene transmembrane protein 14C Neighboring gene PAK1 interacting protein 1 Neighboring gene uncharacterized LOC103694058 Neighboring gene uncharacterized LOC120097872 Neighboring gene glucosaminyl (N-acetyl) transferase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    putative uncharacterized protein C6orf52 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001145021.1 → NP_001138493.1  putative uncharacterized protein C6orf52 homolog

      Status: VALIDATED

      Source sequence(s)
      BC098763
      UniProtKB/TrEMBL
      D4AAN9
      Related
      ENSRNOP00000057088.2, ENSRNOT00000060340.4

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086035.1 Reference GRCr8

      Range
      23959124..23981978
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039096007.2 → XP_038951935.1  putative uncharacterized protein C6orf52 homolog isoform X1

      Conserved Domains (1) summary
      pfam17654
      Location:160 → 215
      Trnau1ap; Selenocysteine tRNA 1 associated proteins

    2. XM_063276689.1 → XP_063132759.1  putative uncharacterized protein C6orf52 homolog isoform X2

    3. XM_039096008.2 → XP_038951936.1  putative uncharacterized protein C6orf52 homolog isoform X3

      Conserved Domains (1) summary
      pfam17654
      Location:97 → 152
      Trnau1ap; Selenocysteine tRNA 1 associated proteins

    4. XM_006253780.5 → XP_006253842.1  putative uncharacterized protein C6orf52 homolog isoform X4

    Nucleotide Protein Strain
    Heading Accession and Version

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